BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0261.0002.p (590 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 260 4e-69 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 260 5e-69 BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 256 8e-68 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 247 4e-65 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 151 3e-36 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 170/585 (29%), Positives = 303/585 (51%), Gaps = 5/585 (0%) Query: 1 MLFIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNEL 60 ++ ++ ++IP + LA+ + +++ + L +M + ++ L++ + I + S + Sbjct: 18 LVSFLSILIIPVVILAIFAYQSASSSLDRQMMGSALENVQQLNEIINTSIGEKENSADYF 77 Query: 61 ADQISAADVTSGS-ARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQKD-YDPRVR 118 ++ ++ + S A +R+ ++ + + +++ + +T G F P Y+P R Sbjct: 78 SEWLTKEKYNAKSNASIREKFSQYISINKDVESIYTSDTKGHFTRYPDLPMPSGYNPVER 137 Query: 119 DWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGLMELAKTVSL 178 DWY A+ + DP + T + ++ I++ DG G I++++++ L++ K V++ Sbjct: 138 DWYKKAVANKGKVVITDPYKTASTNTMVVTIAQQTKDGSGVIAINMTIENLLKTTKKVNI 197 Query: 179 GSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTADMQMAGYYVT 238 G+ GYA+I+ KV+ HP + T + G LD + +A G Y +MA + T Sbjct: 198 GTQGYAFIMTKDKKVVAHPNEQSGTELKGDWLDKMLSADKGDFQYTMDGDKKKMA--FDT 255 Query: 239 NELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRITAPLEALNRS 298 N+L+G+KI G + DE A P+L+ + R IT PL+ L S Sbjct: 256 NKLTGWKIGGTMYLDEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTPLKQLVGS 315 Query: 299 AKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAAASEQLTAST 358 +KR+SEG L E++ R KDE+GEL ++N M SLR+++ + ++ ++AA+SE+LTAS Sbjct: 316 SKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSVDNVAASSEELTASA 375 Query: 359 GENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXXXXXXXLLTE 418 + SKA E++T IE + G + +M++ + + + Sbjct: 376 AQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMAQASEVITDSSVQST 435 Query: 419 KDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASIAKQTNLLSL 478 + + G V QM I SV+++ +++ L S + I IA QTNLL+L Sbjct: 436 EIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLAL 495 Query: 479 NAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASVYDVMRHQVV 538 NA IEAARAGE+GRGF+VVA EVRKL+ S SA EI+ I E+V I + M V Sbjct: 496 NAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEINTSLG-MFQSVN 554 Query: 539 ADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMSASS 583 +V+ G+ + + +F +I + T + ++ +SA +Q+SASS Sbjct: 555 QEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASS 599 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 260 bits (664), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/489 (32%), Positives = 251/489 (51%), Gaps = 4/489 (0%) Query: 96 GNTDGKFMLSPTSDQKD-YDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFP 154 G +G ++ +P + YDPR R WY DA+K V DP + GS ++ I++ Sbjct: 115 GADNGTYVQAPKEKLPEGYDPRQRPWYQDAMKAGGEIVVTDPYVAASDGSMVITIAQELK 174 Query: 155 DGKGAISVSLSMNGLMELAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALS 214 DG G +++ ++++ L+E K + +G GYA+I + H + ++G + + Sbjct: 175 DGSGVVAMDITIDKLLEQMKQIKVGKEGYAFIATKNKTYVAHKNHKAGEKLSGDWVAKMY 234 Query: 215 AAPMGKVSYKDTTADMQMAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXX 274 A G++ Y D +M Y TNEL+G+KI G + DE A +L Sbjct: 235 ANDSGELQYTLNNEDKKMT--YTTNELTGWKIAGTMYMDEIKDASKSVLTTGMIVLIASI 292 Query: 275 XXXXXXXXXXXRRITAPLEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLR 334 R IT PL+ L +S+K +S G L E++ KDE+GEL ++N M QSLR Sbjct: 293 VAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLR 352 Query: 335 TMVQDVSETSGHLAAASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMD 394 +++ + + ++AA+SEQLTAS G+ SKA E++T IE + G ++ Sbjct: 353 SLISAIQNSVNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLN 412 Query: 395 EMSEAIHKXXXXXXXXXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNG 454 M+E + + + + + G VQ G QM +I+ SVQQ+ ++ L G Sbjct: 413 LMNEGLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEG 472 Query: 455 LSAKVAETSTAIASIAKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGE 514 S + I IA QTNLL+LNA IEAARAGE GRGF+VVA EVRKL+ S SA E Sbjct: 473 KSKDITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKE 532 Query: 515 IQETISEMVGLIASVYDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSA 574 I++ I E+V I + + + +V +V+ G+ + E+F I T + ++ +++ Sbjct: 533 IEKLIQEIVAEIDTSLHMFK-EVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNS 591 Query: 575 ITEQMSASS 583 EQ+S S Sbjct: 592 TVEQLSDRS 600 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 256 bits (654), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 0/574 (0%), Positives = 0/574 (0%), Gaps = 5/574 (0%) Query: 10 IPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNELADQISAADV 69 Sbjct: 27 86 Query: 70 T-SGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQ-KDYDPRVRDWYIDALKF 127 Sbjct: 87 146 Query: 128 PESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGLMELAKTVSLGSSGYAYIL 187 Sbjct: 147 206 Query: 188 DSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTADMQMAGYYVTNELSGFKIV 247 Sbjct: 207 -- 264 Query: 248 GVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRITAPLEALNRSAKRVSEGQL 307 Sbjct: 265 324 Query: 308 DESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAAASEQLTASTGENSKAVEY 367 Sbjct: 325 384 Query: 368 VTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXXXXXXXLLTEKDVNNGSAK 427 Sbjct: 385 444 Query: 428 VQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASIAKQTNLLSLNAGIEAARA 487 Sbjct: 445 504 Query: 488 GEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASVYDVMRHQVVADVEQGMTL 547 Sbjct: 505 - 563 Query: 548 ALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMSA 581 Sbjct: 564 597 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 0/592 (0%), Positives = 0/592 (0%), Gaps = 25/592 (4%) Query: 4 IITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNELADQ 63 ++ + + +E S + + ++++ + Sbjct: 21 EKLQDMVQNTIENIEEAEASMEFASGEDKQRIKEKNARREQSIE----------AFRNEI 70 Query: 64 ISAADVTSGS-------ARVRKLI-DKFKAE---HPEIDIVSLGNTDGKFMLSPTSD-QK 111 + Sbjct: 71 QDESAARQNG 130 Query: 112 DYDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGLME 171 Sbjct: 131 190 Query: 172 LAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTADMQ 231 Sbjct: 191 250 Query: 232 MAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRITAP 291 Sbjct: 251 -- 308 Query: 292 LEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAAAS 351 Sbjct: 309 368 Query: 352 EQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXXXX 411 Sbjct: 369 428 Query: 412 XXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASIAK 471 Sbjct: 429 488 Query: 472 QTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASVYD 531 Sbjct: 489 548 Query: 532 VMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMSASS 583 Sbjct: 549 - 599 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 160/299 (53%), Gaps = 2/299 (0%) Query: 286 RRITAPLEALNRSAKRVSEGQLD-ESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETS 344 + IT PL L + A+ V++G L E V + +DEIG+L ++ AM ++LR ++Q + + + Sbjct: 1 KMITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNA 60 Query: 345 GHLAAASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXX 404 +A +SEQL+AS + S A E T IE +RG ++EM++ + + Sbjct: 61 DQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMT 120 Query: 405 XXXXXXXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETST 464 LT N G V+ MQ+I SV+ S + I L+ S + E Sbjct: 121 DGAKQIESNANLTLTYANEGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILD 180 Query: 465 AIASIAKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVG 524 I SIA+QTNLL+LNA IEAARAGEHG+GFAVVA EVRKL+E S S +I + I EMV Sbjct: 181 VIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVK 240 Query: 525 LIASVYDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMSASS 583 + + M V +V G+ A + E F I S + V Q+ ++ +T +++ S Sbjct: 241 ETNNSVEKM-GLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKS 298 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.126 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,752,845 Number of extensions: 1268440 Number of successful extensions: 4678 Number of sequences better than 1.0e-05: 805 Number of HSP's gapped: 3937 Number of HSP's successfully gapped: 812 Length of query: 590 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 478 Effective length of database: 25,461,023 Effective search space: 12170368994 Effective search space used: 12170368994 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 119 (50.4 bits)