BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0029.p (565 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 161 2e-39 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 79 2e-14 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 75 3e-13 YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic... 65 3e-10 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 61 5e-09 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 125/501 (24%), Positives = 229/501 (45%), Gaps = 35/501 (6%) Query: 68 GDSNDNNPISRYLESLTNIKVIHSWEAKGEEPFTQKVQLAIDSND-LPDAMVVDRDQLEK 126 G+ +N ++R+ E IK + W +E F +++L + S + LPD V+ ++ Sbjct: 58 GEDVHDNVVTRWAEEELGIKFVTEWTQPNDEQFNTQLRLMMSSGEKLPDVFQVNDTAIKA 117 Query: 127 -LIDSDMIADLTQTYKEFGSELIKDMYDSTQGEALGDATRNGRLYGLPNVAIHADSPSLL 185 L+ S ++ + + + + S +K +++ +A +T++G YG+P + S +LL Sbjct: 118 DLLSSGLVMPVDEAIETYASPRLKQLFEQFP-QAFYPSTKDGVRYGIPRFSGGNGSDTLL 176 Query: 186 WVRQDWLXXXXXPAPRSFEDIEAIAKAFIEQDPDGNGKRDTVGLSAYNNIVYGTK-PHVN 244 W+RQDWL P + E++E I F+ +DP+ GK DT+G++ + YG + ++ Sbjct: 177 WIRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDTIGIT-FAAGDYGFRGGNIA 235 Query: 245 GLDTLFSALHAF-PTNWIRDSRGNVVYGSITPETKEALGKLAGWYKRGLIDPDFALYK-- 301 +F A F P W + G++VYGSI P K+ L K+ WY++G + DFA+ Sbjct: 236 DSSWVFGAFGDFVPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDFAILSAG 295 Query: 302 ETQEPIISGKAGMFFGPWWMPYYPLSEAVALDTRAEWRAYAAPLDASGKFVTHMAPVTDR 361 + QE ISG++G+ P W YP+ E + A + + +G+ Sbjct: 296 DAQESFISGRSGIMAAPPWAHGYPIGEMAQVVPDAIVKPFPHVSGPNGQAGRRGEGYVVG 355 Query: 362 YLVVRKGYEHPEAVVKLLNVFTRLERRRDPNLEAVRSLDDFSAQTGIQPRAYYPFDLLID 421 + K +EH + + + F + + +D +++ Sbjct: 356 SFLFNKDFEHMDKFFEYWDAIYGYT---------------FGESDYFEYGLFEGYDYVME 400 Query: 422 YADAIEKHYADMQQALHGKIDPDSLDPDTHL------LYDLWLADEEQPKKNLEGWKAAN 475 + + H + +DP T++ +Y L E ++ G++A Sbjct: 401 DGEPVYDHAQFEEITGEEVVDPGRYFLPTNVPTIPFEMYSLLEEFHETGREPETGYEAGL 460 Query: 476 A-----YKYGVSVLSTTAIDRVRSVFYG-STLHMRSNWPELQKLESETFLNIIVGDSPLS 529 A Y ++++ R+ + F G T M S L+++E E F++II G+ PL Sbjct: 461 AGRDPDYIEAAAIVNRQNDLRIINEFNGPPTPTMVSRSEHLERMEDELFVDIIYGNKPLD 520 Query: 530 DFDLFAAKWRSLGGDAITQEV 550 FD F +WR GG+AIT+EV Sbjct: 521 AFDQFVEEWRQSGGEAITEEV 541 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 17/163 (10%) Query: 160 LGDATRNGRLYGLPNVAIHADSP---SLLWVRQDWLXXXXXPAPRSFEDIEAIAKAFIEQ 216 L + + +G++YG I+ + P + +RQDWL P + E++ +A+AF Sbjct: 149 LENVSVDGKIYG-----IYRERPLSRQGVVIRQDWLENLGLEMPTNLEELYEVARAFTYD 203 Query: 217 DPDGNGKRDTVGLSAYNNIVYGTKPHVNGLDTLFSALHAFPTNWIRDSRGNVVYGSITPE 276 DP+G+G DTVG + N++++G TL ++ H P W D G ++ +T E Sbjct: 204 DPNGSGADDTVGFTDRNDLIFG------AFKTL-ASYHGTPNEWGFDDEGKLMPEFMTDE 256 Query: 277 TKEALGKLAGWYKRGLIDPDFALY--KETQEPIISGKAGMFFG 317 E + + Y GLI+ +F + ++ QE ++G+AG++ G Sbjct: 257 YVETMNYMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYVG 299 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 23/251 (9%) Query: 71 NDNNPISRYLESLTNIKVIHSWEAKGEEPFTQKVQLAIDSNDLPDAMVVDRDQLEKLIDS 130 +D +P + LE T ++ +W + + K + + S ++P A+V+ +D+ I S Sbjct: 51 SDKSPSLKALEKYTGKEIKVTWVP--DSSYNDKFNIVMASGEMPHAIVI-KDKSAGFIKS 107 Query: 131 DMIADLTQTYKEFGSELIKDMYDSTQGEA--LGDATRNGRLYGLPNV--AIHADSPSLLW 186 + S +KD + +Q + L +++ NG +YG+ I A + Sbjct: 108 VKAGAFWEL-----SPYLKDYKNLSQADEKILKNSSVNGEVYGIYRTRDLIRA----CMI 158 Query: 187 VRQDWLXXXXXPAPRSFEDIEAIAKAFIEQDPDGNGKRDTVGLSAYNNIVYGTKPHVNGL 246 +R DWL P + +D + KAF E+DPDGNGK DT G+ + G + L Sbjct: 159 IRTDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVL 218 Query: 247 DTLFSALHAFPTNWIRDSRGNVVYGSITPETKEALGKLAGWYKRGLIDPDFALYKETQ-- 304 F A + + G ++ T E +AL Y GLI+ DFA+ + Sbjct: 219 QIWFGAPNRYGV-----ENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWN 273 Query: 305 EPIISGKAGMF 315 +P++ GKAG+ Sbjct: 274 DPVVKGKAGVI 284 >YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 32/272 (11%) Query: 70 SNDNNPISR----YLESLTNIKVIHSWEAKGEEPFTQKVQLAIDSNDLPDAMVVDRDQLE 125 SND+ I + E T IK I + A + F Q++ A N LPD + D + Sbjct: 41 SNDSKNIYKKEADTFEKKTGIK-IEYFNATTD--FEQRLARAAAGNALPDLIFNDAVAIG 97 Query: 126 KLIDSDMIADLTQTYKEFGSELIKDMYDSTQGEALGDATRNGRLYGLPNVAIHADSPSLL 185 + + ++ + G + + STQ +G+ YG+P A L Sbjct: 98 QFVQLGIVEPIEPKNIIGGENIFDTAWKSTQ-------YIDGKYYGVPTSA----QTFAL 146 Query: 186 WVRQDWLXXXXXPAPRSFEDIEAIAKAFIEQDPDGNGKRDTVGLSAYNNIVYGTKPHVNG 245 +VR+DW P++++DI +AKAF DPDGNGK DT G I+ G+ Sbjct: 147 FVRKDWREKLGLEQPKNWQDISTLAKAFTFNDPDGNGKNDTYGF-----ILPGSTTRGYA 201 Query: 246 LDTLFSALHAFPTNWIRDS-RGNVVYGSITPETKEALGKLAGWYKRGLIDPDFALYKETQ 304 + S L ++IR + G + P E L + G + P A+ T Sbjct: 202 SWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSFMRGMVCDKTVQPG-AINATTA 260 Query: 305 EPII---SGKAGMFF-GPWWMPYY---PLSEA 329 + I SG++GMFF GP+ + + P +EA Sbjct: 261 DAIPSFRSGQSGMFFSGPYHIALFDKDPGTEA 292 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 162 DATRNGRLYGLPNVAIHADSP---SLLWVRQDWLXXXXXPAPRSFEDIEAIAKAFIEQDP 218 + T +G+LYG I+ + P + +R+DWL P++ +++ +AKAF E DP Sbjct: 131 NVTIDGKLYG-----IYRERPLSRQGIVIRKDWLDNLNLKTPKTLDELYEVAKAFTEDDP 185 Query: 219 DGNGKRDTVGLSAYNNIVYGTKPHVNGLDTLFSALHAFPTNWIRDSRGNVVYGSITPETK 278 D +GK DT GL+ N+++YG + + PT+W ++S G +T E K Sbjct: 186 DKDGKDDTFGLADRNDLIYGAFKTI-------GSYEGMPTDW-KESGGKFTPDFMTQEYK 237 Query: 279 EALGKLAGWYKRGLIDPDFALYKET--QEPIISGKAGMFFG 317 + + + G ++ DF + +T QE GKAG++ G Sbjct: 238 DTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYIG 278 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 43,527,121 Number of extensions: 1862624 Number of successful extensions: 2897 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 2891 Number of HSP's successfully gapped: 7 Length of query: 565 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 453 Effective length of database: 25,461,023 Effective search space: 11533843419 Effective search space used: 11533843419 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)