BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0018.p
         (198 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhbF [M] COG1664 Integral membrane protein CcmA involved in c...    97   2e-20
BS_yhbE [M] COG1664 Integral membrane protein CcmA involved in c...    94   1e-19

>BS_yhbF [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 235

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 25/199 (12%)

Query: 1   VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRGQGEIRAEC 60
           V GE    GD+   K+ + G  KVSGSL  +   L G+  + G + GES           
Sbjct: 61  VLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIGGNMTGESC---------- 110

Query: 61  VHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLELSL-FGPSRAAEVGGGSIK 119
                    G LSV G+C+ E   ++G V + GLL++  ++L L    +   E+GG +I 
Sbjct: 111 ------DVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDINHVQEIGGTTIT 164

Query: 120 IKRSLGGALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAADTVRGGRVVIGSGCEIGTVE 179
           +KR       + G        +  A +IEGD V L+NT A  VRG  V+IG GC IGT+E
Sbjct: 165 VKRRASFFSRKKG--------KLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIE 216

Query: 180 YRDFLDIHPNAVVRNQVKV 198
           Y    +  P++ ++ + K+
Sbjct: 217 YEYKCECDPHSQIKEKTKL 235


>BS_yhbE [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 321

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 13/218 (5%), Positives = 32/218 (14%), Gaps = 25/218 (11%)

Query: 1   VTGECTFHGDVDCRKLTLMGETKVSGSLVMESMKLTGECSVKGGIEGESLRG------QG 54
              +     +             +    ++   K      V        L         G
Sbjct: 25  AMKQVLEVMEPPTIVFYRFLMASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFG 84

Query: 55  EIRAE------------CVHVEGIKFTGNLSVSGNCDAEDMQISGAVQIDGLLSAETLEL 102
                             V  +       ++       +         +  L        
Sbjct: 85  NFILFSSSLQYLSPTASQVIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFN 144

Query: 103 SL-FGPSRAAEVGGGSIKIKRSLGG-ALIRPGXXXXPGQLRFAAGLIEGDHVDLQNTAAD 160
           +               +          +          Q      L     + L  T   
Sbjct: 145 TSLVEIFTKLTDYTWGVIFGVGAATVWVSY----GVA-QKVLLRRLASPQILFLLYTLCT 199

Query: 161 TVRGGRVVIGSGCEIGTVEYRDFLDIHPNAVVRNQVKV 198
                    G   ++   +    +    N +V      
Sbjct: 200 IALFPLAKPGVIAQLSHWQLACLIFCGLNTLVGYGALA 237


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,022,299
Number of extensions: 544836
Number of successful extensions: 873
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 97
Effective length of database: 26,729,697
Effective search space: 2592780609
Effective search space used: 2592780609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)