BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0011.p (321 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 462 e-130 CAC3183 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 430 e-120 BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 385 e-107 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 384 e-106 BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 377 e-104 >CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 321 Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust. Identities = 215/319 (67%), Positives = 256/319 (80%) Query: 1 MSEALLEVSHLKKYFPVTEGLLNRTVGHVKAVDDISLTLQPGETFGLVGESGSGKSTVGR 60 M EA+L+V +LKKYFP+ G +T G+VK+VDD+S + E GLVGESG GK+T GR Sbjct: 1 MEEAILKVRNLKKYFPIKTGFFRKTTGYVKSVDDVSFDIAENEIMGLVGESGCGKTTTGR 60 Query: 61 TILRLTEKTAGEVKFKGVDIHSLSPAELRLLRPRMQLIFQDPYSALNPRVRVGDAIGEAL 120 T+LRL EKT GEV ++G D+ SL+ LR LRP +Q+IFQDPYS+LNPR+ VG+ +GEAL Sbjct: 61 TLLRLMEKTEGEVLYRGKDLFSLNKKSLRNLRPEIQMIFQDPYSSLNPRMTVGEIVGEAL 120 Query: 121 LDHGLCTKDEVRELVLESLAACGLSYYHIDRFPHEFSGGQRQRIGIARALILNPDLIIAD 180 LDH LCTK EV V E + ACGL+ YH+ RFPHEFSGGQRQRIGIARALILNP I+AD Sbjct: 121 LDHKLCTKSEVNYKVEEMITACGLASYHMRRFPHEFSGGQRQRIGIARALILNPKFIVAD 180 Query: 181 EPVSALDVSIQAQIINLFSKLQQSKGLAYLFISHDLSVVEHLCSRIGVMYLGSMVETAAR 240 EPVSALDVSIQAQ+INL ++LQ+ KG + LFISHDLSVV+H+C +IGVMYLGSMVE A Sbjct: 181 EPVSALDVSIQAQVINLLAELQKKKGFSCLFISHDLSVVQHICQKIGVMYLGSMVELAGN 240 Query: 241 DELFHNPLHPYTKALLSAVPVPVPRLKRERIVLKGDIPSPANPPSGCKFHTRCPFAVEVC 300 +ELF NPLHPYTKALLSA+P+P P LKR RI+LKGDIPSPANPPSGCKFHTRC +A E C Sbjct: 241 EELFTNPLHPYTKALLSAIPIPDPTLKRNRIILKGDIPSPANPPSGCKFHTRCNYATEKC 300 Query: 301 KAENPVFRDAGGGHFVACH 319 E P +++ GHFVACH Sbjct: 301 SKEVPEYKEVIKGHFVACH 319 >CAC3183 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 323 Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 250/323 (77%), Gaps = 2/323 (0%) Query: 1 MSEALLEVSHLKKYFPVTEG--LLNRTVGHVKAVDDISLTLQPGETFGLVGESGSGKSTV 58 MS LLEV++LKKYFPVT L++ G+V+AVD +S + GE FGLVGESGSGK+T+ Sbjct: 1 MSNKLLEVTNLKKYFPVTGAGAFLSKNTGYVRAVDGVSFNINRGEAFGLVGESGSGKTTL 60 Query: 59 GRTILRLTEKTAGEVKFKGVDIHSLSPAELRLLRPRMQLIFQDPYSALNPRVRVGDAIGE 118 G+ +LR+T KT+G V F +DI+SL +L+ LR + Q IFQDPYS+LNPR+ +G AI E Sbjct: 61 GQAVLRMTSKTSGNVNFSNIDIYSLPKKDLKKLRSKAQYIFQDPYSSLNPRMEIGRAIAE 120 Query: 119 ALLDHGLCTKDEVRELVLESLAACGLSYYHIDRFPHEFSGGQRQRIGIARALILNPDLII 178 LL+HGL TKD+V ++V L+ CGL +I+R PHEFSGGQRQRI IARA+ LNP+ I+ Sbjct: 121 PLLEHGLATKDDVIDMVKYFLSLCGLDPSYINRLPHEFSGGQRQRIVIARAMALNPEFIV 180 Query: 179 ADEPVSALDVSIQAQIINLFSKLQQSKGLAYLFISHDLSVVEHLCSRIGVMYLGSMVETA 238 ADEP+SALDVSIQAQIINLFS L+ KGL+YLFISHDLSVVEHLC RI +MYLG +VE A Sbjct: 181 ADEPISALDVSIQAQIINLFSDLRNEKGLSYLFISHDLSVVEHLCDRIAIMYLGIIVELA 240 Query: 239 ARDELFHNPLHPYTKALLSAVPVPVPRLKRERIVLKGDIPSPANPPSGCKFHTRCPFAVE 298 +RDELF P HPYTKALLSAVP+P P LKR RI+L G IPSP NPP GC+FHTRCP A + Sbjct: 241 SRDELFSFPKHPYTKALLSAVPIPDPTLKRNRIILSGSIPSPTNPPYGCRFHTRCPHAQK 300 Query: 299 VCKAENPVFRDAGGGHFVACHLV 321 +C+ P+ +D H VACHLV Sbjct: 301 ICEEIQPMLKDVSNSHKVACHLV 323 >BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 329 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 234/322 (72%), Gaps = 3/322 (0%) Query: 2 SEALLEVSHLKKYFPVTEGLLNRTVGHVKAVDDISLTLQPGETFGLVGESGSGKSTVGRT 61 E +LE+ +KKYFP+ GL R VG VKAVD +S +L+ GET G+VGESG GKST GRT Sbjct: 6 QETILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRT 65 Query: 62 ILRLTEKTAGEVKFKGVDIHSLSPAELRL-LRPRMQLIFQDPYSALNPRVRVGDAIGEAL 120 ++RL + T G++ FKG DI +LS +LR +R +Q++FQDP+++LNPR + I E Sbjct: 66 MIRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPF 125 Query: 121 LDHGLCTKDEVRELVLESLAACGLSYYHIDRFPHEFSGGQRQRIGIARALILNPDLIIAD 180 H + T E E V E LA GL R+PHEFSGGQRQRIGIARAL LNP+LIIAD Sbjct: 126 NTHNMYTMRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIAD 185 Query: 181 EPVSALDVSIQAQIINLFSKLQQSKGLAYLFISHDLSVVEHLCSRIGVMYLGSMVETAAR 240 EPVSALDVSIQ Q+INL +LQ+ L YLFISHDLSVV H+ R+GVMYLG M+E + Sbjct: 186 EPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGK 245 Query: 241 DELFHNPLHPYTKALLSAVPVPVPR--LKRERIVLKGDIPSPANPPSGCKFHTRCPFAVE 298 EL+ NPLHPYT+ALLS+VPV R +KRERIVLKG++PSPANPP GC FHTRCP A Sbjct: 246 HELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKP 305 Query: 299 VCKAENPVFRDAGGGHFVACHL 320 +CK + P F++A HFVACHL Sbjct: 306 ICKEQIPEFKEAAPSHFVACHL 327 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/324 (56%), Positives = 232/324 (71%), Gaps = 3/324 (0%) Query: 1 MSEALLEVSHLKKYFPVTEGLLNRTVGHVKAVDDISLTLQPGETFGLVGESGSGKSTVGR 60 M + LL+V LK+YFP+ G+L RTV HVKAVDD+S T+ GET +VGESG GKST GR Sbjct: 1 MQKELLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGR 60 Query: 61 TILRLTEKTAGEVKFKGVDIHSLSPAELRLLRPRMQLIFQDPYSALNPRVRVGDAIGEAL 120 ILRL E T G+++F+G D+ SL+ E+R R +Q+IFQDPY+++NPR + + EA+ Sbjct: 61 AILRLDEPTDGKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAM 120 Query: 121 LDHGLCTKDEVRELVLESLAACGLSYYHIDRFPHEFSGGQRQRIGIARALILNPDLIIAD 180 + +D+ E + E + GL + DRFPHEFSGGQRQRIGIARAL +NP LI+ D Sbjct: 121 EIQKVVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCD 180 Query: 181 EPVSALDVSIQAQIINLFSKLQQSKGLAYLFISHDLSVVEHLCSRIGVMYLGSMVETAAR 240 E VSALDVSIQAQ+INL +LQ+ L YLFISHDL VV H+ R+ VMYLG +VE A + Sbjct: 181 EAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADK 240 Query: 241 DELFHNPLHPYTKALLSAVPVPVPRLKRERIVLKGDIPSPANPPSGCKFHTRCPFAVEVC 300 LF NP HPYTKALLSA+PVP P K+ERI+LKGD+PSP +PP+GC+FHTRCPFA + C Sbjct: 241 TSLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATDKC 300 Query: 301 KAENPVFRDAG---GGHFVACHLV 321 + E P R A GH ACH + Sbjct: 301 RTETPELRTADYMKDGHLAACHYM 324 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/320 (56%), Positives = 233/320 (72%) Query: 1 MSEALLEVSHLKKYFPVTEGLLNRTVGHVKAVDDISLTLQPGETFGLVGESGSGKSTVGR 60 M + LLEV +L K F + G +R VG V+AVD++S ++ GE G+VGESG GKST G+ Sbjct: 1 MGKPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGK 60 Query: 61 TILRLTEKTAGEVKFKGVDIHSLSPAELRLLRPRMQLIFQDPYSALNPRVRVGDAIGEAL 120 ILRL E ++GEV F G +I +LS ++R R MQ+IFQDPY++LNPR + I E L Sbjct: 61 AILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPL 120 Query: 121 LDHGLCTKDEVRELVLESLAACGLSYYHIDRFPHEFSGGQRQRIGIARALILNPDLIIAD 180 + H + TK E E V E L GLS H R+PH+FSGGQRQRIGIARAL ++P L+I D Sbjct: 121 IVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICD 180 Query: 181 EPVSALDVSIQAQIINLFSKLQQSKGLAYLFISHDLSVVEHLCSRIGVMYLGSMVETAAR 240 EPVSALDVS+Q+QI+NL + L+++ L Y+FI+HDLSVV+H+ R+ VMYLG MVE A + Sbjct: 181 EPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATK 240 Query: 241 DELFHNPLHPYTKALLSAVPVPVPRLKRERIVLKGDIPSPANPPSGCKFHTRCPFAVEVC 300 D+LF NP HPYT+ALLSAVPVP P +E+I+LKGD+PSP+NPP GC FHTRCP ++VC Sbjct: 241 DQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVC 300 Query: 301 KAENPVFRDAGGGHFVACHL 320 K + P + GH+VACHL Sbjct: 301 KIKRPSLHEKEKGHYVACHL 320 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,282,402 Number of extensions: 1026457 Number of successful extensions: 8870 Number of sequences better than 1.0e-05: 2005 Number of HSP's gapped: 6163 Number of HSP's successfully gapped: 2168 Length of query: 321 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 215 Effective length of database: 26,153,027 Effective search space: 5622900805 Effective search space used: 5622900805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)