BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0010.p (327 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 422 e-118 CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 407 e-113 BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 358 7e-99 STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibi... 357 2e-98 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 357 2e-98 >CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 325 Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 257/321 (80%) Query: 4 LMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGG 63 L++++ L T FHTEEG V AVD VSF+++E ET+ IVGESGCGKS+TAMSIM L+ P G Sbjct: 5 LLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLIPNPPG 64 Query: 64 QVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLK 123 ++ GG I F G+DL+++ ++ +R IRGN+I++IFQEPM+SLNPV +GEQI E L++H K Sbjct: 65 KIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEALILHKK 124 Query: 124 LSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPT 183 + KKQA+ A++++T V I R E+I+ +YPHELSGGM QR++IA+A+SC+P+LLIADEPT Sbjct: 125 MDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLIADEPT 184 Query: 184 TALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVEL 243 TALDVTIQAQILD++RE KE SI+LITHDLG+VAEMADYV+VMY+G+IVE+ V+EL Sbjct: 185 TALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKAPVIEL 244 Query: 244 FNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRSRQ 303 + +PKHPYT GLLKSKPV+ + ++LYSI GQVPNPL + + CYF+ RC +CR +Q Sbjct: 245 YKNPKHPYTVGLLKSKPVINRLQDKLYSIEGQVPNPLDMPEGCYFNPRCSKAKDICRKKQ 304 Query: 304 PRLKELDGGQKTACWLYEEAE 324 P LK++ G +CWL EE + Sbjct: 305 PNLKKVSEGHSVSCWLCEEVK 325 >CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 324 Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/318 (60%), Positives = 242/318 (76%), Gaps = 2/318 (0%) Query: 4 LMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGG 63 L+KI L T F+ + AVD +SF V++GETVCIVGESGCGKSVT++SIMGL+ PG Sbjct: 5 LLKISNLKTYFYIDNDIRKAVDNISFSVKKGETVCIVGESGCGKSVTSLSIMGLINEPGR 64 Query: 64 QVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLK 123 +NG I + DLL+L K+ L+ +RG EI+MIFQEPM+SLNPV IG QI E L+ H Sbjct: 65 IING-EILYKNNDLLKLSKSDLQKLRGKEISMIFQEPMTSLNPVFTIGHQITEILLEHEL 123 Query: 124 LSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPT 183 ++K +A +A+ LI VG+ R E+I SYPH+LSGGMLQRI+IA+A+S NPKLLIADEPT Sbjct: 124 INKDEAYKKAIRLINSVGLPRAEEIMKSYPHKLSGGMLQRIIIAMALSSNPKLLIADEPT 183 Query: 184 TALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVEL 243 TALDVTIQAQILD+L++ K SIL ITHDLGVVAE+ADYVIVMY+G+I+EE V+EL Sbjct: 184 TALDVTIQAQILDLLKKLKSTLNTSILFITHDLGVVAEIADYVIVMYAGKIIEEAPVIEL 243 Query: 244 FNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRSRQ 303 F +PKHPYT+GLL SKP++G+ ++LYSI G VP+ L +SCYFHDRCEHC +C + Sbjct: 244 FKNPKHPYTQGLLNSKPIIGKHRDKLYSIKGSVPDLSKLNESCYFHDRCEHCKDICTKKS 303 Query: 304 PRLKELDGGQKTACWLYE 321 P ++ KTACWLYE Sbjct: 304 PAF-TVNNNHKTACWLYE 320 >BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 329 Score = 358 bits (919), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 170/319 (53%), Positives = 237/319 (74%) Query: 4 LMKIEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGG 63 +++++ L T F T++G+V AVD VS ++ +GE + IVGESGCGKSVT++SIM LV P G Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 64 QVNGGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLK 123 ++ G + F GEDL+++ ++ IRGN+IAMIFQEPM+SLNP+ IG Q++E + H K Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 124 LSKKQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPT 183 ++K++AR +AV ++ +VGI R ++I YPH+LSGGM QR+MIA+A+ C+PK+LIADEPT Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184 Query: 184 TALDVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVEL 243 TALDVTIQAQILD++R E +ILLITHDLGVVAE+ + V+VMY+GQ+VEEG V + Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244 Query: 244 FNHPKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMPVCRSRQ 303 HPKHPYT+GLLKS P + ++ + LYSIPG VP P + C F RCE C++ Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304 Query: 304 PRLKELDGGQKTACWLYEE 322 P+L+++ G + C+LYEE Sbjct: 305 PQLQQVATGHQCRCFLYEE 323 >STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs Length = 305 Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 0/317 (0%), Positives = 0/317 (0%), Gaps = 2/317 (0%) Query: 7 IEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGGQVN 66 + L + + TV G ++ ++ G+ Sbjct: 1 MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDR-IGRKI 59 Query: 67 GGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLKLSK 126 + + + + I + E + L + + Sbjct: 60 NMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTV 119 Query: 127 KQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPTTAL 186 + L + I G + RI I + + A Sbjct: 120 LGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAE 179 Query: 187 DVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVELFNH 246 + E + L E + + + E Sbjct: 180 RTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATQMV 239 Query: 247 PKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMP-VCRSRQPR 305 + + V Q+ E G N ++ + Sbjct: 240 SEAIAAGDIQAINYFVAQKYTEALQQIGSANNSKVVMMPLDASSLMGAIAGISELVKDSA 299 Query: 306 LKELDGGQKTACWLYEE 322 Sbjct: 300 316 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 177/317 (55%), Positives = 232/317 (73%), Gaps = 2/317 (0%) Query: 7 IEGLSTVFHTEEGKVTAVDKVSFQVREGETVCIVGESGCGKSVTAMSIMGLVEAPGGQVN 66 +E L T F+TE+G V AVD VSF+VREGET+ IVGESG GKSVT++SIM L++ G++ Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQ-NGKIV 59 Query: 67 GGRIDFAGEDLLRLDKNTLRAIRGNEIAMIFQEPMSSLNPVMKIGEQIMEPLMVHLKLSK 126 G+I F G +LL L +N +R IRG EIAMIFQEPM +LNPV IG+QIME +++H +S+ Sbjct: 60 DGKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSE 119 Query: 127 KQARIRAVELITQVGIARPEQIFGSYPHELSGGMLQRIMIAIAVSCNPKLLIADEPTTAL 186 K+AR A++L+ +VGI PE+ YPH+LSGGM QR MIA+A+SC P LLIADEPTTAL Sbjct: 120 KEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTAL 179 Query: 187 DVTIQAQILDMLREFKENSGMSILLITHDLGVVAEMADYVIVMYSGQIVEEGGVVELFNH 246 DVTIQAQIL++++E ++ GM+I+LITHD+GVVAEM+D V VMY+G++VE G V +F Sbjct: 180 DVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTE 239 Query: 247 PKHPYTRGLLKSKPVVGQRLEELYSIPGQVPNPLMLEQSCYFHDRCEHCMP-VCRSRQPR 305 PKHPYT LL+S P + E L SIPG VP+PL C FH RCE C +P Sbjct: 240 PKHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPE 299 Query: 306 LKELDGGQKTACWLYEE 322 L++LDG K C+ +++ Sbjct: 300 LEDLDGNHKVRCFFWQK 316 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,199,436 Number of extensions: 1058073 Number of successful extensions: 9229 Number of sequences better than 1.0e-05: 1984 Number of HSP's gapped: 6475 Number of HSP's successfully gapped: 2154 Length of query: 327 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 220 Effective length of database: 26,037,693 Effective search space: 5728292460 Effective search space used: 5728292460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)