BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0260.0007.p (171 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3180 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 165 3e-41 CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 117 7e-27 CAC2375 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 103 1e-22 MA0881 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 95 5e-20 BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 95 6e-20 >CAC3180 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 318 Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 77/168 (45%), Positives = 107/168 (63%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M Y+ +R L M ++ PGD+I N LT +R ELR + G +KP++ Sbjct: 1 MKKYILRRFLQMIPTLIGVSIIIFYLFSLMPGDYIDSNRNLTPQRAHELRVLNGFDKPII 60 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 RY W+ N HGDFG+SL +PV L N YIWNSF++A V+ LTW IA+++G+ SA Sbjct: 61 VRYLIWLRNILHGDFGFSLKYLEPVTTLINQYIWNSFIIAIVTLILTWSIALVIGIFSAT 120 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVITT 168 KQYS+FD ++ + +FA++S PSFFIGL +IK VDLK LP GG++ T Sbjct: 121 KQYSFFDRVITLLVFASLSFPSFFIGLLMIKFFGVDLKILPIGGMVET 168 >CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 322 Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 3/171 (1%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITG---NIKLTAERKAELREIYGLNK 57 M Y+ KRLL M ++ PGD + N +T + ++LR +Y L+K Sbjct: 1 MLRYIVKRLLQMIPILIGVSIVIFIIFSLAPGDIVDNMGVNSHMTTAKASQLRHLYHLDK 60 Query: 58 PVLERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVI 117 +Y W+ +A G+FGYSL ++PV + YIWNSF+L+ +S V+A+ +G++ Sbjct: 61 SKPLQYLYWIKDAASGNFGYSLEYRQPVSTVIKSYIWNSFILSFMSFIAAIVLAIPIGIV 120 Query: 118 SAYKQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVITT 168 SA KQYS FD++ V +S+P+FF+GL LIK +D K P G+ T+ Sbjct: 121 SATKQYSAFDSIFTVIALIGISIPAFFMGLLLIKWFCIDFKIFPVSGMTTS 171 >CAC2375 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 317 Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 1/168 (0%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFITGNIKLTAERKAELREIYGLNKPVL 60 M Y+ KRL +M + PGD T ++ ++ + KAE+R Y L++P + Sbjct: 1 MIRYIVKRLFFMIPIIIITSFIIYMIFTLAPGDIAT-SMNISPKEKAEMRHKYHLDEPKV 59 Query: 61 ERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVISAY 120 +Y W+ A HGD G S +PV + N YIWNSF L S L +IA+ +G ISA Sbjct: 60 IQYCKWLYGASHGDLGRSYKLNQPVKSVINKYIWNSFYLQFASFILAILIAIPIGAISAI 119 Query: 121 KQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVITT 168 +++S FD+ V +S+P+FF+GL L+K A DL P G+ T Sbjct: 120 RKHSIFDSGFTVFSLVGISMPTFFLGLILMKWFAADLNIFPVEGMTAT 167 >MA0881 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 259 Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFIT-------GNIKLTAERKAELREIY 53 M ++ KR++ M TPGD G LT E +R Sbjct: 1 MLKFILKRMVLMFIVILGVTMLTFLIMHFTPGDPAEMIALARHGAESLTPENIERIRVEE 60 Query: 54 GLNKPVLERYGTWMNNAFHGDFGYSLAQQKPVLQLFNDYIWNSFLLAAVSTFLTWVIAVI 113 GL+ PV +Y W+ + HGD G SL +PVL D + LA S F+ +IA+ Sbjct: 61 GLDAPVHIQYIKWLQHLLHGDLGCSLINGEPVLSEILDRFPATLKLALASMFIALIIAIP 120 Query: 114 VGVISAYKQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLP 161 +G+I+A KQYS FD L M+ +S+PSF+ L LI + A+ L W P Sbjct: 121 LGIITASKQYSLFDNLSMMGAMVGVSMPSFWFALLLIHLFALHLGWFP 168 >BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 317 Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 3/170 (1%) Query: 1 MSTYLTKRLLYMXXXXXXXXXXXXXXYASTPGDFIT--GNIKLTAERKAELREIYGLNKP 58 M+ Y+ +R L + PGD +T + K++ + + E YGLN P Sbjct: 1 MAAYIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDP 60 Query: 59 VLERYGTWMNNAFHGDFGYSLAQQ-KPVLQLFNDYIWNSFLLAAVSTFLTWVIAVIVGVI 117 +Y W+ N GDFG S+ ++ PV +L + N+ LL VST L +I++ GV+ Sbjct: 61 QYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVL 120 Query: 118 SAYKQYSWFDTLVMVAIFAAMSLPSFFIGLFLIKILAVDLKWLPPGGVIT 167 SA + YS D + F +++P+F+ GL LI +L+V+L W P GGV T Sbjct: 121 SAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVET 170 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,790,323 Number of extensions: 412496 Number of successful extensions: 1599 Number of sequences better than 1.0e-05: 157 Number of HSP's gapped: 1539 Number of HSP's successfully gapped: 157 Length of query: 171 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 72 Effective length of database: 26,960,365 Effective search space: 1941146280 Effective search space used: 1941146280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 112 (47.8 bits)