BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0006.p
         (112 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3179 [E] COG0747 ABC-type dipeptide transport system, peripla...    77   5e-15
AGl3251 [R] COG0523 Putative GTPases (G3E family)                      49   1e-06
AGl3258 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com...    49   1e-06
AGl3254 [S] COG1238 Predicted membrane protein                         49   1e-06
AGl3257 [R] COG0523 Putative GTPases (G3E family)                      49   1e-06

>CAC3179 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component
          Length = 567

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 4/109 (3%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFFDGE----ITDYDNPKFLELYNKALATTDIE 56
           V K+  GDYDL +  TS L DP D   +F   +    ++ Y NPK  EL ++ + T +++
Sbjct: 450 VEKLNKGDYDLAAVRTSGLVDPNDSVEEFSSKKTSENVSGYFNPKVDELISEGVNTLNVK 509

Query: 57  QRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSPFIGLAGS 105
           +RKA+YK+LY+  +D+ P++   Y+K + A+N RI+ +    F G++ +
Sbjct: 510 KRKAIYKKLYKELSDDPPVILIDYRKGLKAWNSRIKGMENDNFAGVSST 558


>AGl3251 [R] COG0523 Putative GTPases (G3E family)
          Length = 190

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/102 (0%), Positives = 0/102 (0%), Gaps = 4/102 (3%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFF--DGEITD--YDNPKFLELYNKALATTDIE 56
                                                                       
Sbjct: 389                                                              448

Query: 57  QRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSP 98
                                                     
Sbjct: 449                                            490


>AGl3258 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component
          Length = 190

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/102 (0%), Positives = 0/102 (0%), Gaps = 4/102 (3%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFF--DGEITD--YDNPKFLELYNKALATTDIE 56
                                                                       
Sbjct: 389                                                              448

Query: 57  QRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSP 98
                                                     
Sbjct: 449                                            490


>AGl3254 [S] COG1238 Predicted membrane protein
          Length = 190

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/102 (0%), Positives = 0/102 (0%), Gaps = 4/102 (3%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFF--DGEITD--YDNPKFLELYNKALATTDIE 56
                                                                       
Sbjct: 389                                                              448

Query: 57  QRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSP 98
                                                     
Sbjct: 449                                            490


>AGl3257 [R] COG0523 Putative GTPases (G3E family)
          Length = 190

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/102 (0%), Positives = 0/102 (0%), Gaps = 4/102 (3%)

Query: 1   VSKVEGGDYDLVSFSTSMLTDPADGFMQFF--DGEITD--YDNPKFLELYNKALATTDIE 56
                                                                       
Sbjct: 389                                                              448

Query: 57  QRKAVYKELYQLFNDELPILFTSYKKTVYAYNGRIQNLTVSP 98
                                                     
Sbjct: 449                                            490


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,732,334
Number of extensions: 311465
Number of successful extensions: 1092
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1093
Number of HSP's successfully gapped: 5
Length of query: 112
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 33
Effective length of database: 29,267,045
Effective search space: 965812485
Effective search space used: 965812485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)