BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0002.p
         (285 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3648 [R] COG0456 Acetyltransferases                                 78   1e-14

>CAC3648 [R] COG0456 Acetyltransferases
          Length = 292

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 22/287 (7%)

Query: 3   LNTAEMLKDIEELQQRCEQYEGISLKLNWDM-LRLSPEAGGAEWL-VTYEEDVLAGFIGL 60
           LNT E++++IE+L + C +++GI  ++N D     +      +WL V YE+D +   + +
Sbjct: 9   LNT-ELVREIEKLTETCGKFDGIQEEVNLDDGFNFNK---SMKWLFVLYEKDKVVSVVSI 64

Query: 61  YGIA---GEMEVCGMVRPGFRRRGIFTSLWEQAQSIIKRNQIRTLLLNXXXXXXXXXGFL 117
           +      GE+  C +  P +RR+G F  L  +A++ + +  +  +L             +
Sbjct: 65  FAPKEEEGEISACTL--PEYRRKGYFKELLSKAKNELLKYNVPKILFVCPKGSKQGEAVI 122

Query: 118 KTLPVVFNHAEYQMKWDGSAVPQGSPEASSAAGAVVLRPARQDEADL--LVELDCSGFDM 175
           K    ++  AEY M ++ +           A G  + + A  +  DL  + ++    +  
Sbjct: 123 KNSDAIYKFAEYTMNFNKNKFK--------AKGKYITKLAEANYNDLNKITKVASDVYSE 174

Query: 176 SKEDAAEMYTXXXXXXXXXXXXXXXXGQPAGKMRLWTEDNETWIYGFTVDKKLRGLGIGR 235
           S E A  M                      G +  +   ++  I+G  +  + RG G GR
Sbjct: 175 SYEQANSMMKNALESSDRLQFKLKLKEDYIGVVAAYFYHDKVSIFGVGILPEYRGRGFGR 234

Query: 236 SALLQTIERE-QRNYNGVNLEVALDNPNALRLYESCGFVILNKQDYY 281
             +   +E   +R+Y+ + LEV  +N  A  LY+S GF I  + DYY
Sbjct: 235 EMMSMLLEYLIERDYDDIALEVDSNNKRAFELYKSIGFQIEREIDYY 281


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,613,893
Number of extensions: 718959
Number of successful extensions: 2752
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 180
Effective length of database: 26,268,361
Effective search space: 4728304980
Effective search space used: 4728304980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)