BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0005.p (324 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA769 [S] COG4529 Uncharacterized protein conserved in bacteria 239 3e-63 AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport... 239 3e-63 AGpA704 [E] COG0006 Xaa-Pro aminopeptidase 239 3e-63 AGpA799 [R] COG0388 Predicted amidohydrolase 239 3e-63 AGpA731 [O] COG1975 Xanthine and CO dehydrogenases maturation fa... 239 3e-63 >AGpA769 [S] COG4529 Uncharacterized protein conserved in bacteria Length = 373 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+PAIQ S G + A+ASR K+ + FG+A++YGSYE+LLADPE+D Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 A+Y PLPNHLH I+A E GK VLCEKPIAL++ +A E+ A + A + +AEA+M RH Sbjct: 108 AIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRH 167 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ + +I G +G++R+I+ F+Y D N+R + GGG L+DVGCY ++ AR Sbjct: 168 HPQWKKAHALITEGRLGEVRAIQTIFSYY-LDDPGNVRNQVDIGGGGLFDVGCYAINTAR 226 Query: 181 LLFGAEPEAATVQAIFSPEHDNV---DMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLG 237 LF AEP ++AI E D V D + SGL+ FP G L F C Q + VLG Sbjct: 227 FLFDAEP----LRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLG 282 Query: 238 TEGRIELPMPFNARFDDAEFFVYSGG 263 T GR+E+P+PFNA D+ ++ G Sbjct: 283 TRGRLEIPIPFNAPADEPTVLIFDDG 308 >AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+PAIQ S G + A+ASR K+ + FG+A++YGSYE+LLADPE+D Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 A+Y PLPNHLH I+A E GK VLCEKPIAL++ +A E+ A + A + +AEA+M RH Sbjct: 108 AIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRH 167 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ + +I G +G++R+I+ F+Y D N+R + GGG L+DVGCY ++ AR Sbjct: 168 HPQWKKAHALITEGRLGEVRAIQTIFSYY-LDDPGNVRNQVDIGGGGLFDVGCYAINTAR 226 Query: 181 LLFGAEPEAATVQAIFSPEHDNV---DMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLG 237 LF AEP ++AI E D V D + SGL+ FP G L F C Q + VLG Sbjct: 227 FLFDAEP----LRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLG 282 Query: 238 TEGRIELPMPFNARFDDAEFFVYSGG 263 T GR+E+P+PFNA D+ ++ G Sbjct: 283 TRGRLEIPIPFNAPADEPTVLIFDDG 308 >AGpA704 [E] COG0006 Xaa-Pro aminopeptidase Length = 373 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+PAIQ S G + A+ASR K+ + FG+A++YGSYE+LLADPE+D Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 A+Y PLPNHLH I+A E GK VLCEKPIAL++ +A E+ A + A + +AEA+M RH Sbjct: 108 AIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRH 167 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ + +I G +G++R+I+ F+Y D N+R + GGG L+DVGCY ++ AR Sbjct: 168 HPQWKKAHALITEGRLGEVRAIQTIFSYY-LDDPGNVRNQVDIGGGGLFDVGCYAINTAR 226 Query: 181 LLFGAEPEAATVQAIFSPEHDNV---DMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLG 237 LF AEP ++AI E D V D + SGL+ FP G L F C Q + VLG Sbjct: 227 FLFDAEP----LRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLG 282 Query: 238 TEGRIELPMPFNARFDDAEFFVYSGG 263 T GR+E+P+PFNA D+ ++ G Sbjct: 283 TRGRLEIPIPFNAPADEPTVLIFDDG 308 >AGpA799 [R] COG0388 Predicted amidohydrolase Length = 373 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+PAIQ S G + A+ASR K+ + FG+A++YGSYE+LLADPE+D Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 A+Y PLPNHLH I+A E GK VLCEKPIAL++ +A E+ A + A + +AEA+M RH Sbjct: 108 AIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRH 167 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ + +I G +G++R+I+ F+Y D N+R + GGG L+DVGCY ++ AR Sbjct: 168 HPQWKKAHALITEGRLGEVRAIQTIFSYY-LDDPGNVRNQVDIGGGGLFDVGCYAINTAR 226 Query: 181 LLFGAEPEAATVQAIFSPEHDNV---DMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLG 237 LF AEP ++AI E D V D + SGL+ FP G L F C Q + VLG Sbjct: 227 FLFDAEP----LRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLG 282 Query: 238 TEGRIELPMPFNARFDDAEFFVYSGG 263 T GR+E+P+PFNA D+ ++ G Sbjct: 283 TRGRLEIPIPFNAPADEPTVLIFDDG 308 >AGpA731 [O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Length = 373 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 1 MGCAQIATGSVMPAIQESETGIIQAVASRGLDKSSAVAEEFGVAQAYGSYEELLADPEVD 60 +GCA IA +V+PAIQ S G + A+ASR K+ + FG+A++YGSYE+LLADPE+D Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 61 AVYIPLPNHLHREWVIRAAEAGKHVLCEKPIALNSREAAEMVEACRRAGVHLAEAYMYRH 120 A+Y PLPNHLH I+A E GK VLCEKPIAL++ +A E+ A + A + +AEA+M RH Sbjct: 108 AIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRH 167 Query: 121 HPRIAEVQEIIASGEIGDLRSIRGTFTYNDAGDTSNIRFKSAWGGGSLYDVGCYPLSAAR 180 HP+ + +I G +G++R+I+ F+Y D N+R + GGG L+DVGCY ++ AR Sbjct: 168 HPQWKKAHALITEGRLGEVRAIQTIFSYY-LDDPGNVRNQVDIGGGGLFDVGCYAINTAR 226 Query: 181 LLFGAEPEAATVQAIFSPEHDNV---DMMASGLVEFPGGVSLIFDCGMWAYNRQLLEVLG 237 LF AEP ++AI E D V D + SGL+ FP G L F C Q + VLG Sbjct: 227 FLFDAEP----LRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLG 282 Query: 238 TEGRIELPMPFNARFDDAEFFVYSGG 263 T GR+E+P+PFNA D+ ++ G Sbjct: 283 TRGRLEIPIPFNAPADEPTVLIFDDG 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,286,710 Number of extensions: 890527 Number of successful extensions: 1863 Number of sequences better than 1.0e-05: 156 Number of HSP's gapped: 1753 Number of HSP's successfully gapped: 156 Length of query: 324 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 217 Effective length of database: 26,037,693 Effective search space: 5650179381 Effective search space used: 5650179381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)