BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0003.p (251 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase ... 181 8e-46 VNG0470G [V] COG1131 ABC-type multidrug transport system, ATPase... 181 1e-45 PH1230 [V] COG1131 ABC-type multidrug transport system, ATPase c... 179 4e-45 CC0838 [V] COG1131 ABC-type multidrug transport system, ATPase c... 177 1e-44 CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase ... 174 1e-43 >PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 253 Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 144/227 (63%) Query: 2 NYSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGD 61 + + VL+GI V G+I G +GPNG+GKSTT++I+ G++ + G V + G ++A Sbjct: 10 RFGGKEVLKGISFTVKDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVIVGGVEVAKDP 69 Query: 62 AAYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMR 121 KR +GYVPE LY+SLT E+ +F+G + G+ + + + +L++ +KK + Sbjct: 70 LQVKRIVGYVPETPALYESLTPAEFFSFVGGVRGIPKDILEERVRKLVEAFEIKKYMNQL 129 Query: 122 IASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSS 181 I + S G KQK+ LISS+LHDP +L LDE ++GLD S + +E+ +GK+I +S+ Sbjct: 130 IGTLSFGTKQKISLISSLLHDPKVLILDEAMNGLDPKSARIFRELLYEFKEEGKSIVFST 189 Query: 182 HIMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLT 228 H++ + E I R+ +I G I+A+GT +L+E ++E LED+F +LT Sbjct: 190 HVLALAELICDRVGIIYQGRIIAEGTVEELKEISKEERLEDVFLKLT 236 >VNG0470G [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 252 Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 140/230 (60%), Gaps = 4/230 (1%) Query: 3 YSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGDA 62 Y D + +DL V G + G++GPNGAGK+TT++++ L + GT + G + D A Sbjct: 15 YGDEAAVDDLDLAVPAGSVYGFLGPNGAGKTTTMRLLTSLTDPTAGTAEVAGVPVTDR-A 73 Query: 63 AYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMRI 122 A RIGY+P ++D LT E L + L+G+ EAD + E L++ +L D RI Sbjct: 74 ALTPRIGYLPADPPVFDELTGWEQLRHVARLHGLDDGEADTRIESLLERFDLLADADRRI 133 Query: 123 ASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSSH 182 SYS GM +KV ++++MLHDPD+LFLDEP SGLD + V++ A L+A T+ S+H Sbjct: 134 ESYSTGMTKKVGVVAAMLHDPDVLFLDEPTSGLDPRAARTVRDTVADLSAGDATVLLSTH 193 Query: 183 IMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGS---LEDIFNQLTG 229 ++ VV++++ I +I+ G +VADG L+ REGS LE +F ++T Sbjct: 194 VLPVVDELADTIGVIDDGVLVADGDPENLKSTAREGSAADLETVFMEVTA 243 >PH1230 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 253 Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 143/230 (62%), Gaps = 6/230 (2%) Query: 2 NYSDRMVLRGIDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGD 61 + + VL+GI+ V G+I G +GPNG+GKSTT++I+ G++ + G V + G D++ Sbjct: 10 KFGSKEVLKGINFTVNDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVMVAGVDVSRDP 69 Query: 62 AAYKRRIGYVPEIAELYDSLTAREYLTFIGELYGMKRTEAD---AKAERLMDLLNLKKAY 118 K +GYVPE LY+SLT E+ +FIG G++R D + +RL+D + K Sbjct: 70 MKVKEIVGYVPETPALYESLTPAEFFSFIG---GVRRIPQDILEERVKRLVDAFGIGKYM 126 Query: 119 DMRIASYSKGMKQKVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIF 178 + I + S G KQK+ LIS++LHDP +L LDE ++GLD S + +E+ +GK+I Sbjct: 127 NQLIGTLSFGTKQKISLISALLHDPQVLILDEAMNGLDPKSARIFRELLFEFKEEGKSIV 186 Query: 179 YSSHIMDVVEKISSRIILINGGDIVADGTFAQLQEQNREGSLEDIFNQLT 228 +S+HI+ + E + RI +I G IVA+GT +L+E RE LEDIF +LT Sbjct: 187 FSTHILALAEVMCDRIGIIYEGRIVAEGTIDELREIAREEKLEDIFLKLT 236 >CC0838 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 250 Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 12 IDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGDAAYKRRIGYV 71 +DL V G++ +GPNGAGK+TT++++ GL + G + IFG D A K + + Sbjct: 26 LDLTVRAGELYALLGPNGAGKTTTLRMVAGLTQPDAGEIAIFGVDARKDPAGAKALLAWA 85 Query: 72 PEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMRIASYSKGMKQ 131 P+ A +YD LT EYL F+ L+ + A AKAE L+ L L R +S+GMKQ Sbjct: 86 PDEAMIYDKLTPLEYLEFVAGLWNINPRTAKAKAEELLATLGLASEARRRCEGFSRGMKQ 145 Query: 132 KVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSSHIMDVVEKIS 191 KV L +++HDP +L LDEPL+GLDA + +VK++ + G T+ ++HI+DV E+++ Sbjct: 146 KVALAGALIHDPKLLILDEPLTGLDAAAARLVKDMLQARVDAGGTVILTTHILDVAERMA 205 Query: 192 SRIILINGGDIVADGTFAQLQEQNREGS---LEDIFNQLT 228 RI +I GG ++A+GT +L+ + E S LED+F QLT Sbjct: 206 DRIGIIAGGRLLAEGTLDELRSRAGEASGRTLEDVFLQLT 245 >CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 258 Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 145/218 (66%), Gaps = 2/218 (0%) Query: 12 IDLEVYRGQIIGYIGPNGAGKSTTVKIMLGLVEGYTGTVRIFGRDIADGDAAYKRRIGYV 71 ++ + G+I G++GPNGAGKSTT+K++ G+++ +G +++ G +I + KR+IGYV Sbjct: 35 LNFTINSGEIFGFLGPNGAGKSTTIKMITGIIKADSGEIKVDGLNIKENPIEAKRKIGYV 94 Query: 72 PEIAELYDSLTAREYLTFIGELYGMKRTEADAKAERLMDLLNLKKAYDMRIASYSKGMKQ 131 P+ +++ L EYL F+ ++Y + ++ + E L +++ A D +I SYS GM+Q Sbjct: 95 PDSPDMFLRLKGIEYLNFMADIYDVTTSDRKERIESLSKYFDMESALDDKIQSYSHGMRQ 154 Query: 132 KVLLISSMLHDPDILFLDEPLSGLDANSVMVVKEIFASLAAQGKTIFYSSHIMDVVEKIS 191 K++++ +++HDPD+ LDEP++GLD + +KE+ A GKT+F+S+H+++V EK+ Sbjct: 155 KIVVMGALIHDPDVWILDEPMTGLDPKASYNLKEMMRKHADSGKTVFFSTHVLEVAEKLC 214 Query: 192 SRIILINGGDIVADGTFAQLQEQNRE--GSLEDIFNQL 227 RI +++ G IV GT +++++ +E SLE +F +L Sbjct: 215 DRIGIVSKGKIVFCGTMNEMKQKLQEEGSSLERMFLEL 252 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,845,253 Number of extensions: 787090 Number of successful extensions: 7689 Number of sequences better than 1.0e-05: 2093 Number of HSP's gapped: 5679 Number of HSP's successfully gapped: 2304 Length of query: 251 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 147 Effective length of database: 26,383,695 Effective search space: 3878403165 Effective search space used: 3878403165 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)