BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0056.p
         (205 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2021 [S] COG0344 Predicted membrane protein                          89   6e-18
TM1447 [S] COG0344 Predicted membrane protein                          81   9e-16

>DR2021 [S] COG0344 Predicted membrane protein
          Length = 198

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 28  KGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXXXXX 87
           +GVDIR+ GSGN+GATN LR +GKGPA+LV   D+LKG+                     
Sbjct: 28  RGVDIRKVGSGNSGATNVLRSLGKGPALLVASFDILKGV-LAVLLARALGLSAEWAALCG 86

Query: 88  XXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXXXXXXXXTKYVSLGSLLF 147
                 HN+  +  FRGGKG+AT+ GV+A L                  T++VS GS++ 
Sbjct: 87  VLAVIGHNFSPFLAFRGGKGVATSFGVIAILDPVLGLTTFVLAIACMWLTRFVSAGSIMG 146

Query: 148 VALTPVFLIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKIGSKVK 199
             +    ++       +    L +A    W+HR NI K+  G E ++G KV 
Sbjct: 147 AFIAGALVLVLPRPTWDRAAVLFLAALLVWQHRENIRKLQAGTERRLGEKVS 198


>TM1447 [S] COG0344 Predicted membrane protein
          Length = 196

 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 25  RMLKGVDIRQYGSGNAGATNTLRVMGKGPAILVLILDVLKGIXXXXXXXXXXXXXXXXXX 84
           + LKG+D+R+ GSGN GATN +R  G     + L+LD LKG                   
Sbjct: 24  KWLKGIDVRKVGSGNVGATNAIRTTGPAVGGICLLLDALKGF-FPVFITITFSGDSKIVS 82

Query: 85  XXXXXXXXXHNWPLYFHFRGGKGIATTIGVMATLVFWPXXXXXXXX-XXXXXXTKYVSLG 143
                    H++P++  F+GGKG+A+T+G++  L  WP               TKY SLG
Sbjct: 83  LTAIATVLGHDFPIFMKFKGGKGVASTLGIIFCLS-WPTGLVFTLTWLVIVMLTKYASLG 141

Query: 144 SLLFVALTPVF-LIFTGFTAPELWGSLIIAIFAFWRHRSNIVKISQGRENKI 194
           SL+ + ++ +   +  G+    L+  LI+A+ +  RH  NI ++  G E K+
Sbjct: 142 SLVALYVSALLGYLLKGYDTGMLF--LILAVLSTLRHSENIQRLLNGTERKV 191


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.327    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,745,684
Number of extensions: 321018
Number of successful extensions: 631
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 104
Effective length of database: 26,729,697
Effective search space: 2779888488
Effective search space used: 2779888488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)