BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0036.p
         (89 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2221 [NT] COG1352 Methylase of chemotaxis methyl-accepting pr...   103   5e-23
VC2201 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    69   2e-12
BB0040 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    68   4e-12
VCA1091 [NT] COG1352 Methylase of chemotaxis methyl-accepting pr...    64   5e-11
PA3348 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro...    62   2e-10

>CAC2221 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins
          Length = 255

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 62/85 (72%)

Query: 4   VSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGYLF 63
           + + +KK I F+K +L+LD +D  FDL+ICRNV+IYF ++ K K+Y KFS SL+ GG LF
Sbjct: 170 IVDKIKKMITFKKHDLILDSYDNNFDLVICRNVVIYFNQDVKEKIYKKFSQSLKKGGLLF 229

Query: 64  VGSTEQIFTPAQYGFESTETFFYRK 88
           VG+TE I+   +YGFE   TF YRK
Sbjct: 230 VGATESIYNYKEYGFEKASTFIYRK 254


>VC2201 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins
          Length = 275

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 3   KVSEGLKKNIDFRKQNLLLDKFDEG-FDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGY 61
           KV + +K+ ++FR QNL+      G FD+I CRNV+IYF+ + K+K+ ++ +ASL PGGY
Sbjct: 186 KVKDNVKRLVNFRPQNLMESYSLLGKFDIIFCRNVLIYFSPDMKSKVLNQMAASLNPGGY 245

Query: 62  LFVGSTEQI 70
           L +G++E +
Sbjct: 246 LLLGASESL 254


>BB0040 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins
          Length = 283

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 10/85 (11%)

Query: 2   FKVSEGLKKNIDFRKQNLLLDKF--DEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPG 59
           F+V E LKK + F+K NL+ +KF   + FDLI CRNVMIYF E+ +N L +KF++ L+  
Sbjct: 196 FQVKEILKKMVYFKKLNLMDEKFPFSKKFDLIFCRNVMIYFDEKTRNNLANKFNSYLKKD 255

Query: 60  GYLFVGSTEQI--------FTPAQY 76
            YL +G +E I          PA Y
Sbjct: 256 SYLLIGHSETIRGNKNLEYIMPATY 280


>VCA1091 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins
          Length = 276

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 2   FKVSEGLKKNIDFRKQNLLLD-KFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
            K+ + L++ IDF + NL+ +  F +  DLI+CRNVMIYF    + +L  +F   L+PGG
Sbjct: 189 MKIKQSLQRYIDFHQLNLIQEWPFKQKLDLILCRNVMIYFDRPTQEQLIERFHQQLKPGG 248

Query: 61  YLFVGSTEQI 70
            L +G +E +
Sbjct: 249 VLMLGHSESV 258


>PA3348 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins
          Length = 274

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 2   FKVSEGLKKNIDFRKQNLLLDKFDEG-FDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           + V   ++  ++FR  NLL      G FD++ CRNV+IYF+ E K  +  +   +L+PGG
Sbjct: 184 WAVKPAIRSRVEFRALNLLDSYASLGKFDMVFCRNVLIYFSAEVKRDILLRIHGTLKPGG 243

Query: 61  YLFVGSTEQIFT-PAQYGF-ESTETFFYRKK 89
           YLF+G++E +   P  Y   + +    YR K
Sbjct: 244 YLFLGASEALNNLPDHYQMVQCSPGIIYRAK 274


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.142    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,221,120
Number of extensions: 209911
Number of successful extensions: 498
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 19
Length of query: 89
Length of database: 38,378,431
Length adjustment: 59
Effective length of query: 30
Effective length of database: 31,573,725
Effective search space: 947211750
Effective search space used: 947211750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)