BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0022.p
         (189 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1827 [K] COG1309 Transcriptional regulator                         123   2e-28
BH1002 [K] COG1309 Transcriptional regulator                           73   3e-13
Z2510 [K] COG1309 Transcriptional regulator                            52   4e-07
ECs1862 [K] COG1309 Transcriptional regulator                          52   4e-07
aq_2179 [K] COG1309 Transcriptional regulator                          51   1e-06

>lin1827 [K] COG1309 Transcriptional regulator
          Length = 191

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 1   MNKFEIRTQTKKDAIVAAALRLFQEKGFTHVSIKDIAAESGVSSVSLYNYFGNKEGVVRE 60
           MN +E RT  KK AI  AAL LF + GF+ VSIKDIA+ +GVS VS+YNYFGNKE +V E
Sbjct: 1   MNNYEKRTLKKKTAITHAALTLFGKAGFSEVSIKDIASLAGVSQVSIYNYFGNKEALVAE 60

Query: 61  CANVLMQNSVRKAKELLGQNIGFKDKMLRALEIC-ADQDYQL---LSSPGAVEDQVLSSL 116
           CA V+MQ+++  A+E+L     F +K+ RA+++C A+ +  L   +S+  + + Q ++ L
Sbjct: 61  CAKVIMQDTISLAEEILVSEGTFTEKLTRAIQLCHAEINVSLSKFISTEASKDSQFITLL 120

Query: 117 YNENTNRIRVEIIQEFIGQGKSEGVIDASVSMDTILELLCAIGPL 161
            N N N+++ +I  E++  GK   VI+  +S D I   + +I  L
Sbjct: 121 VN-NINKLKNDIYMEYVAAGKKAKVINNDISDDVIQLFIDSINGL 164


>BH1002 [K] COG1309 Transcriptional regulator
          Length = 201

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 11/159 (6%)

Query: 1   MNKFEIRTQTKKDAIVAAALRLFQEKGFTHVSIKDIAAESGVSSVSLYNYFGNKEGVVRE 60
           M+ F+ R + KK  I+ AAL LF E G   VSI +IA  + VS V++YNYF +K  +  E
Sbjct: 1   MDGFQRRKEQKKRDILEAALSLFMEYGLQKVSIAEIAKNANVSQVTIYNYFESKHNLTHE 60

Query: 61  CANVLMQNSVRKAKELLGQNIGFKDK----MLRALEIC---ADQDYQLLSSPGAVEDQVL 113
                M  +VR  ++ +  +  F +K    M R  E+     ++ YQ L       + + 
Sbjct: 61  VFLYYMDKAVRDFEQTVYSDKPFPEKIKEIMFRKKEVARRIHEEFYQYLMKEYTANETIA 120

Query: 114 SSLYNENTNRIRVEIIQEFIGQGKSEGVIDASVSMDTIL 152
            + Y +N  +    + QE    GK +G +D S+S + I+
Sbjct: 121 ENDYMQNALQHFDHLFQE----GKEQGYVDPSLSHEAII 155


>Z2510 [K] COG1309 Transcriptional regulator
          Length = 188

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 2  NKFEIRTQTKKDAIVAAALRLFQEKGFTHVSIKDIAAESGVSSVSLYNYFGNKEGVVRE 60
          +K EIR + ++D I+ AA R F+  GF   S+  IA+E+ +S   +Y YF NK+ ++ E
Sbjct: 3  SKLEIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYRYFANKDAIIEE 61


>ECs1862 [K] COG1309 Transcriptional regulator
          Length = 188

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 2  NKFEIRTQTKKDAIVAAALRLFQEKGFTHVSIKDIAAESGVSSVSLYNYFGNKEGVVRE 60
          +K EIR + ++D I+ AA R F+  GF   S+  IA+E+ +S   +Y YF NK+ ++ E
Sbjct: 3  SKLEIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYRYFANKDAIIEE 61


>aq_2179 [K] COG1309 Transcriptional regulator
          Length = 666

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 2/55 (3%), Positives = 4/55 (7%), Gaps = 1/55 (1%)

Query: 5  EIRTQTKKDAIVAAALRLFQEKGFTHVSIKDIAAESGVSSVSLYNYFGNKEGVVR 59
                         ++   E       I                          
Sbjct: 9  CGVGCGL-YINEKGKVKGDFEHPANLGDICKKPLYLPKVLNRGRIAKPMYRENKS 62


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,758,892
Number of extensions: 368551
Number of successful extensions: 2617
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2622
Number of HSP's successfully gapped: 8
Length of query: 189
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 89
Effective length of database: 26,845,031
Effective search space: 2389207759
Effective search space used: 2389207759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)