BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0012.p (223 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1673 [C] COG1290 Cytochrome b subunit of the bc complex 374 e-104 BS_qcrB [C] COG1290 Cytochrome b subunit of the bc complex 366 e-101 alr3421 [C] COG1290 Cytochrome b subunit of the bc complex 213 1e-55 slr0342 [C] COG1290 Cytochrome b subunit of the bc complex 210 1e-54 VNG0583G [C] COG1290 Cytochrome b subunit of the bc complex 142 6e-34 >BH1673 [C] COG1290 Cytochrome b subunit of the bc complex Length = 223 Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/223 (79%), Positives = 197/223 (88%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M + +Y+WIDER D+TPIWRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQILSGM Sbjct: 1 MLQRLYDWIDERFDLTPIWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDIINAY SV YLQ +VAFG IVRGMHHWGASLVIVMMFLHT+RVFFTGSYK Sbjct: 61 FLTMYYVPDIINAYQSVAYLQNEVAFGVIVRGMHHWGASLVIVMMFLHTLRVFFTGSYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGG 180 PRE+NWV+G+LIFFVMLGLG TGYLLPWD KAYFAT V L+IA SVP++G K L+ GG Sbjct: 121 PRELNWVIGVLIFFVMLGLGFTGYLLPWDMKAYFATVVGLQIAESVPIIGDFAKTLLAGG 180 Query: 181 TIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 I+GA TL RFFA+HVFFLPA LL L+ HF +IR+QGISGPL Sbjct: 181 EIIGASTLARFFAIHVFFLPAALLGLIGVHFYLIRKQGISGPL 223 >BS_qcrB [C] COG1290 Cytochrome b subunit of the bc complex Length = 224 Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/224 (77%), Positives = 197/224 (87%), Gaps = 1/224 (0%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M +Y+W+DERLDITP+WRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQ+LSGM Sbjct: 1 MLNKIYDWVDERLDITPMWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQVLSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDI NA+ SV YLQ +VAFGQIVRGMHHWGASLVIVMMFLHT+RVFF G+YK Sbjct: 61 FLTMYYVPDIKNAWESVYYLQNEVAFGQIVRGMHHWGASLVIVMMFLHTLRVFFQGAYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQG- 179 PRE+NW+VG+LIFFVMLGLG TGYLLPWD KA FATKV L+IA + P++G +K L+ G Sbjct: 121 PRELNWIVGVLIFFVMLGLGFTGYLLPWDMKALFATKVGLQIAEATPLIGTQVKTLLAGH 180 Query: 180 GTIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 IVGA+TLTRFFA+HVFFLPA L L+ HFIMIR+QGISGPL Sbjct: 181 PDIVGAQTLTRFFAIHVFFLPAALFGLMAAHFIMIRKQGISGPL 224 >alr3421 [C] COG1290 Cytochrome b subunit of the bc complex Length = 359 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 16/220 (7%), Positives = 36/220 (16%), Gaps = 7/220 (3%) Query: 4 NVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGMFLT 63 I+ R + R + V V + + L Sbjct: 3 AATVVINRRALRHNLQRLRELAPASKMVA-------VVKANAYGHGLLETARTLPDADAF 55 Query: 64 MYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKAPRE 123 + + + + S +H + E Sbjct: 56 GVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDE 115 Query: 124 MNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGGTIV 183 V L + + ++ V + + + Sbjct: 116 PVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQL 175 Query: 184 GAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 + A ILL + Sbjct: 176 AIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILY 215 >slr0342 [C] COG1290 Cytochrome b subunit of the bc complex Length = 222 Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 141/221 (63%), Gaps = 7/221 (3%) Query: 3 KNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGMFL 62 V+ W ++RL++ I D+A VP HVN YC GGLT +IQ +G + Sbjct: 9 SKVFQWFNDRLEVQAISDDIASKYVPPHVN-------IFYCLGGLTLTCFLIQFATGFAM 61 Query: 63 TMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKAPR 122 T YY P + A+ASV+Y+ +V FG ++R +H W AS++++MM LH RV+ TG +K PR Sbjct: 62 TFYYKPTVTEAFASVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPR 121 Query: 123 EMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGGTI 182 E+ WVVG+++ + G+TGY LPWD Y+A K+ + ++PV+G L LM+G Sbjct: 122 ELTWVVGVMLAVTTVTFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDQLVTLMRGSES 181 Query: 183 VGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 VG TLTRF++LH F LP + +LL+ HF+MIR+QGISGPL Sbjct: 182 VGQATLTRFYSLHTFVLPWAIAVLLLLHFLMIRKQGISGPL 222 >VNG0583G [C] COG1290 Cytochrome b subunit of the bc complex Length = 270 Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 22/243 (9%) Query: 2 FKNVYNWIDERLDITP-------IWRDVADHEVPEHVNPAHHFSAFVYCFG--GLTFFIT 52 F V W+D RL I ++ V H + + F Y + L FF T Sbjct: 27 FLTVLVWLDRRLRIVDYLELLETLYYRVNLQMPKSHTEQYNLDNKFWYWYPLYSLGFFST 86 Query: 53 ---VIQILSGMFLTMYYVPDIINA----------YASVEYLQTKVAFGQIVRGMHHWGAS 99 V+ +SG L YY P A Y +V + T + FG +R +H W A Sbjct: 87 LSYVVAAISGALLGFYYSPSAAAATCGVDGSTVAYCAVAGIMTDLNFGFFLRSLHRWAAQ 146 Query: 100 LVIVMMFLHTMRVFFTGSYKAPREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVT 159 ++ +FLH +RV+FTGSYK PRE+NW++G+++ + + G TGYLLPWD AY+A ++ Sbjct: 147 VMTAAVFLHMLRVYFTGSYKEPREVNWLIGIVLLSLTMVFGYTGYLLPWDQLAYWAGQIG 206 Query: 160 LEIANSVPVMGPVLKELMQGGTIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGI 219 +E++ S+P++G + +LM GG +G TL R + LHVF LP V+ ++ H ++ QGI Sbjct: 207 VEMSLSIPLVGDWVAQLMFGGFSLGQATLQRMYLLHVFLLPFVVTTVIAIHLGLVWMQGI 266 Query: 220 SGP 222 + P Sbjct: 267 AEP 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.145 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,903,653 Number of extensions: 663033 Number of successful extensions: 2944 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 2932 Number of HSP's successfully gapped: 17 Length of query: 223 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 121 Effective length of database: 26,614,363 Effective search space: 3220337923 Effective search space used: 3220337923 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 114 (48.5 bits)