BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0011.p
         (290 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1674_1 [C] COG1290 Cytochrome b subunit of the bc complex           124   2e-28
BS_qcrC_1 [C] COG1290 Cytochrome b subunit of the bc complex          112   6e-25
BH1674_2 [C] COG2010 Cytochrome c, mono- and diheme variants           58   2e-08
BS_cccB [C] COG2010 Cytochrome c, mono- and diheme variants            56   8e-08
BH1378 [C] COG2010 Cytochrome c, mono- and diheme variants             50   3e-06

>BH1674_1 [C] COG1290 Cytochrome b subunit of the bc complex
          Length = 128

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 83/120 (69%), Gaps = 3/120 (2%)

Query: 13  YVGDSRVRRGSGFI--TPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXXXXXTISEPAP 70
           +VGDSR+      +   P DY+ YPGK+EAF PNFLLKEWM            T++ PAP
Sbjct: 9   FVGDSRLTTKEHRMANVPKDYSEYPGKTEAFYPNFLLKEWMVGAVFLTGYLLLTVAHPAP 68

Query: 71  LGFPAN-ANATVIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGSLLLAPFLDT 129
           L   A+  ++  IP+PDWYFLFLYQ LK P+ASGDY V+GT+ + G+AFG+LLLAP+LDT
Sbjct: 69  LERMADPTDSGYIPLPDWYFLFLYQLLKYPFASGDYNVIGTVVMPGLAFGALLLAPWLDT 128


>BS_qcrC_1 [C] COG1290 Cytochrome b subunit of the bc complex
          Length = 126

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 13  YVGDSRVRRGSGFITPPDYTAYPGKSEAFIPNFLLKEWMXXXXXXXXXXXXTISEPAPLG 72
           +VGDSR+        P DY+ YPGK+EAF PNFLLKEWM            TI    PL 
Sbjct: 9   FVGDSRIPAEKKPNIPKDYSEYPGKTEAFWPNFLLKEWMVGAVFLIGFLVLTIVHQPPLE 68

Query: 73  FPANANAT-VIPIPDWYFLFLYQYLKLPYASGDYIVLGTLGVTGVAFGSLLLAPFLD 128
             A+   T  IP+PDWYFLFLYQ LK  YA+G + V+G + + G+AFG+LLLAPFLD
Sbjct: 69  RMADPTDTGYIPLPDWYFLFLYQLLKYEYAAGSFTVVGAMIMPGLAFGALLLAPFLD 125


>BH1674_2 [C] COG2010 Cytochrome c, mono- and diheme variants
          Length = 132

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 30/133 (22%)

Query: 130 GRERRFYRRPIASSLMFLSLIAIVYLTNTAWTEYKHE-MAETGQIPEDVQREEKAAENKA 188
           G+ERR  RRPIAS LM L+ + I YLT  +  ++  E  A+ G+I       E+  + +A
Sbjct: 1   GKERRPLRRPIASGLMLLAFVLIAYLTWESVDQHDWEAAAKQGEIV------EQEIDTEA 54

Query: 189 KGLPTTSAVQAKEIAIVDKDDPAMGLFKQATCVTCHAVDMK-GAGGPSLRGVGDTHDKEA 247
           +G    S                     Q +C+ CH   ++ GA GP+L     T D+  
Sbjct: 55  QGYEIYS--------------------NQQSCIGCHGNQLEGGASGPNLIESEKTVDE-- 92

Query: 248 ILAIIKNGQGQMP 260
           I  +I NGQG MP
Sbjct: 93  IKEVIINGQGDMP 105


>BS_cccB [C] COG2010 Cytochrome c, mono- and diheme variants
          Length = 112

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 217 QATCVTCHAVDMKGAGGPSLRGVGDTHDKEAILAIIKNGQGQMPP--MHDTAIAAGLSEQ 274
           Q +CV CH  D++G  GP+L+ VG  +D+  I +IIKNG+G MP   + D   A      
Sbjct: 49  QQSCVGCHGKDLEGVSGPNLQEVGGKYDEHKIESIIKNGRGNMPKGLVDDNEAAV----- 103

Query: 275 DIDSLAAWLAKQK 287
               +A WL+++K
Sbjct: 104 ----IAKWLSEKK 112


>BH1378 [C] COG2010 Cytochrome c, mono- and diheme variants
          Length = 124

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 204 IVDKDDP--AMGLFKQATCVTCHAVDMKGAGGPSLRGVGDTHDKEAILAIIKNGQGQMPP 261
           +V+ DDP  A       +C+ CH  D+ G  GP+L G+   +  E I  I++NG+G MP 
Sbjct: 46  VVEFDDPVEAGEQIVNQSCIGCHGGDLSGGAGPALTGLEGKYSAEEIADIVQNGKGAMPA 105

Query: 262 M-HDTAIAAGLSE 273
           M HD A A  +++
Sbjct: 106 MPHDDAEADAIAQ 118


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 21,438,450
Number of extensions: 853256
Number of successful extensions: 2094
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 6
Length of query: 290
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 185
Effective length of database: 26,268,361
Effective search space: 4859646785
Effective search space used: 4859646785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)