BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0004.p (267 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3076 [IQ] COG0236 Acyl carrier protein 92 8e-19 AGc3078 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid... 92 8e-19 AGc3079 [E] COG0019 Diaminopimelate decarboxylase 92 8e-19 AGc3072 [C] COG1062 Zn-dependent alcohol dehydrogenases, class III 92 8e-19 mlr7948 [E] COG0289 Dihydrodipicolinate reductase 79 5e-15 >AGc3076 [IQ] COG0236 Acyl carrier protein Length = 289 Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 11/248 (4%), Positives = 32/248 (12%), Gaps = 14/248 (5%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSS---GSDAGRLVGLEESGIVVVSD 61 I + G K ++ L+ ++ D + Sbjct: 10 TLTINAFVVGYPIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAA 69 Query: 62 LETALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGI 121 + + + + + Sbjct: 70 VGGNATIPHK--EAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERH 127 Query: 122 GGLIAPNFSIG----AILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISE 177 A + Q+ + EI + + Sbjct: 128 --PGWDKTQRAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHP 185 Query: 178 VRQ-ELRQGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSY 236 + I + + Sbjct: 186 QAALQEVMHGAGLFVNTTSLGMNGTEAPH--LDFSHLAANAVVTDIVYVPLKTPILNMAQ 243 Query: 237 ERAGYMPG 244 E+ Sbjct: 244 EQGIATVD 251 >AGc3078 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Length = 346 Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 16/248 (6%), Positives = 42/248 (16%), Gaps = 14/248 (5%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSS---GSDAGRLVGLEESGIVVVSD 61 + + G M A + E G+ Sbjct: 10 SLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYV 69 Query: 62 LETALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGI 121 + + P+ + L + + Sbjct: 70 GNWLAKHGSR--EKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLD 127 Query: 122 GGLIAPNFSIG----AILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISE 177 L ++ + +A L+ ++ + + + E Sbjct: 128 --LYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFG 185 Query: 178 VRQ-ELRQGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSY 236 V + ++ +Q E V L + Sbjct: 186 VMRYLHLADKHDLPRIVTIQNPYSLLNRS--FEVGLAEVSQYEGVELLAYSCLGFGTLTG 243 Query: 237 ERAGYMPG 244 + Sbjct: 244 KYLNGAKP 251 >AGc3079 [E] COG0019 Diaminopimelate decarboxylase Length = 289 Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 11/248 (4%), Positives = 32/248 (12%), Gaps = 14/248 (5%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSS---GSDAGRLVGLEESGIVVVSD 61 I + G K ++ L+ ++ D + Sbjct: 10 TLTINAFVVGYPIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAA 69 Query: 62 LETALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGI 121 + + + + + Sbjct: 70 VGGNATIPHK--EAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERH 127 Query: 122 GGLIAPNFSIG----AILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISE 177 A + Q+ + EI + + Sbjct: 128 --PGWDKTQRAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHP 185 Query: 178 VRQ-ELRQGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSY 236 + I + + Sbjct: 186 QAALQEVMHGAGLFVNTTSLGMNGTEAPH--LDFSHLAANAVVTDIVYVPLKTPILNMAQ 243 Query: 237 ERAGYMPG 244 E+ Sbjct: 244 EQGIATVD 251 >AGc3072 [C] COG1062 Zn-dependent alcohol dehydrogenases, class III Length = 289 Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 11/248 (4%), Positives = 32/248 (12%), Gaps = 14/248 (5%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSS---GSDAGRLVGLEESGIVVVSD 61 I + G K ++ L+ ++ D + Sbjct: 10 TLTINAFVVGYPIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAA 69 Query: 62 LETALAESGGEVLVDFTTPQSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGI 121 + + + + + Sbjct: 70 VGGNATIPHK--EAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERH 127 Query: 122 GGLIAPNFSIG----AILMMKFAAQAAKYFPHLEIIEYHGDQKLDAPSGTAIKTAEMISE 177 A + Q+ + EI + + Sbjct: 128 --PGWDKTQRAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHP 185 Query: 178 VRQ-ELRQGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSY 236 + I + + Sbjct: 186 QAALQEVMHGAGLFVNTTSLGMNGTEAPH--LDFSHLAANAVVTDIVYVPLKTPILNMAQ 243 Query: 237 ERAGYMPG 244 E+ Sbjct: 244 EQGIATVD 251 >mlr7948 [E] COG0289 Dihydrodipicolinate reductase Length = 346 Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 12/240 (5%), Positives = 35/240 (14%), Gaps = 25/240 (10%) Query: 5 IRVIVSGAGGRMGKEVVKLVLQDEELELAAAVDRSSSGSDAGRLVGLEESGIVVVSDLET 64 + G++ + + A ++ V Sbjct: 12 EVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEM-----------YPVPPRPE 60 Query: 65 ALAESGGEVLVDFTTP-QSAYPNTLLAIKYGVRPVIGTTGFSPEQITELDKQCRERGIGG 123 L I V LD++ + Sbjct: 61 TQG----LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL-- 114 Query: 124 LIAPNFSIGAILMMKFAAQAAKYFP----HLEIIEYHGDQKLDAPSGTAIKTAEMISEVR 179 + L + + + A+ + ++R Sbjct: 115 HDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIR 174 Query: 180 -QELRQGNPKEEEVIEGARGGYYNGFRIHSVRLPGVFAQEEVVFGGYGQSLKIRHDSYER 238 + + + G + + Sbjct: 175 YIGVSNETAFGVMRYLHLADKHDLPRIV--TIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,979,512 Number of extensions: 876632 Number of successful extensions: 1950 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 1939 Number of HSP's successfully gapped: 7 Length of query: 267 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 162 Effective length of database: 26,268,361 Effective search space: 4255474482 Effective search space used: 4255474482 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)