BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0001.p
         (202 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0032 [K] COG1309 Transcriptional regulator                          65   8e-11
ZuidR [K] COG1309 Transcriptional regulator                            59   4e-09
uidR [K] COG1309 Transcriptional regulator                             59   4e-09
ZuidR [K] COG1309 Transcriptional regulator                            59   4e-09
ECs2326 [K] COG1309 Transcriptional regulator                          59   4e-09

>CAC0032 [K] COG1309 Transcriptional regulator
          Length = 189

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 15/161 (9%)

Query: 12  ETKKRIVQKAAQLFVQKGYGAVTMNEVCSAAKVSKGSLYHHFPSKDELFLYVVEDDT--- 68
           +TK  I + A  +F + GY   TM+E+ S AKV+KG+LY+HF SK+E+F YV+ +     
Sbjct: 3   KTKNAIFKSALMIFSKNGYDGATMDEIASNAKVAKGTLYYHFKSKEEIFKYVISEGMNVI 62

Query: 69  -EQWLSQWAEKSRSISGLEE--RFYALGEHYAN-DFQNPLIRALEEYARARPHSDEVHQR 124
            E+   +  ++S  ++ L+   RF  +G  + N DF   L+  L          D     
Sbjct: 63  REEMEQEAGKESNPVNKLKAICRF-QIGMIFRNRDFFKVLMSQL-------WGQDSRQLE 114

Query: 125 LAQLYESASEACRNLLQEGMDSGYLVKGDLDNYVIVVSGLL 165
           L ++ +   E     L++ M+ GY+ KG+ +       G+L
Sbjct: 115 LRKVIKDYIEIIERYLKDAMEKGYIKKGETEFMSYTFFGVL 155


>ZuidR [K] COG1309 Transcriptional regulator
          Length = 196

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%)

Query: 7  RSDGEETKKRIVQKAAQLFVQKGYGAVTMNEVCSAAKVSKGSLYHHFPSKDELFLYVVED 66
          +++ + T+ RI+  A ++F + G+ + +M  +C +  +S G+LYHHF SK+ L   ++  
Sbjct: 6  QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65

Query: 67 DTEQWLSQWAEKSRSI 82
          D E+ L+++ E    I
Sbjct: 66 DQERALARFREPIEGI 81


>uidR [K] COG1309 Transcriptional regulator
          Length = 196

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%)

Query: 7  RSDGEETKKRIVQKAAQLFVQKGYGAVTMNEVCSAAKVSKGSLYHHFPSKDELFLYVVED 66
          +++ + T+ RI+  A ++F + G+ + +M  +C +  +S G+LYHHF SK+ L   ++  
Sbjct: 6  QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65

Query: 67 DTEQWLSQWAEKSRSI 82
          D E+ L+++ E    I
Sbjct: 66 DQERALARFREPIEGI 81



 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%)

Query: 7  RSDGEETKKRIVQKAAQLFVQKGYGAVTMNEVCSAAKVSKGSLYHHFPSKDELFLYVVED 66
          +++ + T+ RI+  A ++F + G+ + +M  +C +  +S G+LYHHF SK+ L   ++  
Sbjct: 6  QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65

Query: 67 DTEQWLSQWAEKSRSI 82
          D E+ L+++ E    I
Sbjct: 66 DQERALARFREPIEGI 81


>ECs2326 [K] COG1309 Transcriptional regulator
          Length = 196

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%)

Query: 7  RSDGEETKKRIVQKAAQLFVQKGYGAVTMNEVCSAAKVSKGSLYHHFPSKDELFLYVVED 66
          +++ + T+ RI+  A ++F + G+ + +M  +C +  +S G+LYHHF SK+ L   ++  
Sbjct: 6  QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65

Query: 67 DTEQWLSQWAEKSRSI 82
          D E+ L+++ E    I
Sbjct: 66 DQERALARFREPIEGI 81


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,659,727
Number of extensions: 535186
Number of successful extensions: 2718
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2723
Number of HSP's successfully gapped: 35
Length of query: 202
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 101
Effective length of database: 26,729,697
Effective search space: 2699699397
Effective search space used: 2699699397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)