BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0039.p
         (549 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0033 [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiestera...   117   4e-26

>STM0033 [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and
           related esterases
          Length = 523

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 20/265 (7%), Positives = 34/265 (12%), Gaps = 36/265 (13%)

Query: 145 KTRTVDDFVAGKYTGTN-GEKLNYRLKLTDSAAPQ---PLIVWLHGGGEVGTDNLKQLTE 200
             +     V                      AA               +   + LK   +
Sbjct: 152 LIKEPYTIVEKDGFKIGVIGMHGVSAFYEAIAAGVREGVDCRDPIPYVKKQLEELKGKVD 211

Query: 201 NKGAVAWIDSGYDTS----VLAVQFPKNYGWKIY-------NNPEELSLMRDYFEVQAEL 249
               +A        S        +  K              N              +   
Sbjct: 212 LTVLLAHEGVPGMQSSAGEADVARALKTDVDMAKSLEGYGLNVLITGHA------HKGTP 265

Query: 250 IGELVDSGKVDPNRIYXXXXXXXXXXALRFLMQYPGLFAGSIVISAKDAVADYTGSVDTF 309
               V    V     Y                +        I + A              
Sbjct: 266 EPIKVGDTLVVSTDAYTIELGKLVLDWNPETKKVDSYNGKLITMYAD-------TYKPDP 318

Query: 310 KRELKDLTDVPVWLVHAQNDPITDSRTSTLAYEALTGLGNKQAKLSIYDDAFMASQQLYG 369
                    +  W    +         S        G         I D        + G
Sbjct: 319 VT----QAKIDEWDNKVKKITDEVVAHSPEVLTRSYGESAP-TGNLITDALMA---TVPG 370

Query: 370 DFRHCSWVTVFNDKNMLAWLFEQKK 394
                        +     +     
Sbjct: 371 ADASFYNAGGIRTELPKGNITYGDV 395


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 38,489,005
Number of extensions: 1601454
Number of successful extensions: 2611
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2608
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 438
Effective length of database: 25,576,357
Effective search space: 11202444366
Effective search space used: 11202444366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 118 (50.1 bits)