BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0038.p
         (179 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MT0053 [K] COG1695 Predicted transcriptional regulators                66   3e-11
Rv0047c [K] COG1695 Predicted transcriptional regulators               65   5e-11
ML2691 [K] COG1695 Predicted transcriptional regulators                64   2e-10
L9255 [K] COG1695 Predicted transcriptional regulators                 52   4e-07
BH3951 [K] COG1695 Predicted transcriptional regulators                50   1e-06

>MT0053 [K] COG1695 Predicted transcriptional regulators
          Length = 180

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 7   DILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKVDGK 66
           ++ ILG L++ P HGYE++K +   LG     +   LYPALRR Q  G + +      G 
Sbjct: 3   ELAILGLLIESPMHGYELRKRLTGVLGAFRAFSYGSLYPALRRMQADGLIAENAAPA-GT 61

Query: 67  P---DRHVYLLTDTGEEVFIELIRDF-PRKAAANPMEFLVRVALFDRLEPELQLDILQKR 122
           P    R VY LTD G   F EL+ D  P     +   F V +A F+R   E ++ IL+ R
Sbjct: 62  PVRRARRVYQLTDKGRRRFGELVADTGPHNYTDD--GFGVHLAFFNRTPAEARMRILEGR 119

Query: 123 LSVLEEELKHSRQ--YDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLI 168
              +EE  +  R+       S +R+  ++ +     +E E  W+ +LI
Sbjct: 120 RRQVEERREGLREAVARASSSFDRYTRQLHQLGLESSEREVKWLNELI 167


>Rv0047c [K] COG1695 Predicted transcriptional regulators
          Length = 180

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 7   DILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKVDGK 66
           ++ ILG L++ P HGYE++K +   LG     +   LYPALRR Q  G + +      G 
Sbjct: 3   ELAILGLLIESPMHGYELRKRLTGLLGAFRAFSYGSLYPALRRMQADGLIAENAAPA-GT 61

Query: 67  P---DRHVYLLTDTGEEVFIELIRDF-PRKAAANPMEFLVRVALFDRLEPELQLDILQKR 122
           P    R VY LTD G   F EL+ D  P     +   F V +A F+R   E ++ IL+ R
Sbjct: 62  PVRRARRVYQLTDKGRRRFGELVADTGPHNYTDD--GFGVHLAFFNRTPAEARMRILEGR 119

Query: 123 LSVLEEELKHSRQ--YDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLI 168
              +EE  +  R+       S +R+  ++ +     +E E  W+ +LI
Sbjct: 120 RRQVEERREGLREAVARASSSFDRYTRQLHQLGLESSEREVKWLNELI 167


>ML2691 [K] COG1695 Predicted transcriptional regulators
          Length = 311

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 4/116 (3%), Positives = 18/116 (15%), Gaps = 7/116 (6%)

Query: 7   DILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKVDGK 66
                  L             +      +  +    L+ ++       +   E       
Sbjct: 3   RNFFKHLLESLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVR-IV 61

Query: 67  P---DRHVYLLTDTGEEVFIELIRDF-PRKAAANPMEFLVRVALFDRLEPELQLDI 118
                      T   +    +   +        +         +        +  +
Sbjct: 62  AYMKLDVHDQETKIQDPKDNKKTINNPDHLKIYD--SIKKVPNVKTVEFSSKEAQL 115


>L9255 [K] COG1695 Predicted transcriptional regulators
          Length = 179

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%)

Query: 9   LILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKVDGKPD 68
           +ILG L   P  GY++KK  +  +GE ++ N   +YP+LR      A+T +V  V  K +
Sbjct: 10  IILGLLKTEPLSGYDLKKKFESEVGEFWQANTGQIYPSLRVLLNDQAVTFDVHIVGEKLE 69

Query: 69  RHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFD 108
           +  Y +T  G E+F E ++    +      EF++R+   D
Sbjct: 70  KKTYQITPKGIELFNEWLKHPVDRYPIQKDEFMLRLYFLD 109


>BH3951 [K] COG1695 Predicted transcriptional regulators
          Length = 184

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%)

Query: 10 ILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKVDGKPDR 69
          ILG L    K GY IK+ I ++L   ++I+   +YP L++  E G         +GKPDR
Sbjct: 11 ILGILTTDCKSGYAIKQLIDQSLNHFWKISYGQIYPTLKKIVEDGLAEVRTAATEGKPDR 70

Query: 70 HVYLLTDTGEEVF 82
          + Y LT  G E  
Sbjct: 71 NEYFLTPKGIETL 83


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,142,902
Number of extensions: 484951
Number of successful extensions: 1026
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 7
Length of query: 179
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 79
Effective length of database: 26,845,031
Effective search space: 2120757449
Effective search space used: 2120757449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)