BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0032.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2983 [K] COG2207 AraC-type DNA-binding domain-containing prot... 145 1e-34 celD [K] COG2207 AraC-type DNA-binding domain-containing proteins 78 2e-14 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 68 2e-11 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 65 1e-10 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 61 2e-09 >lin2983 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 326 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 153/293 (52%), Gaps = 3/293 (1%) Query: 33 AAIIEVNGISTILEHFLRPGEHFSFFKHPRYLAAPGHRHDFLEINFVYSGECRQVINGKP 92 + ++ NG +L + + KH R+ P H H FLE+N++YSG QVI G Sbjct: 31 GSFLKENGSMELLNDYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSGSSEQVIEGNK 90 Query: 93 VILAAGEFCMMDSNVIHSIEKPGDNDIIINLLMSKRYFDIDIMKRL-SGNDLMSEFLINS 151 L GE ++DS HSI+ G+ DI+IN+L + ++ + + N L+ +FL++S Sbjct: 91 ETLHEGELLLLDSACHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLFDFLLHS 150 Query: 152 IYRSQDHNDYMIFHSSTNHNARTCMEHSLCESFDPAVGSEEAINCHIILLFTELMR--DY 209 Q Y+IF S+ + + + + E F S I ++ +LFTEL+R D Sbjct: 151 SVSEQSLKKYIIFQSAQIPHIQQFLNQIITEYFLEEEFSSRIITLYLPILFTELVRKCDT 210 Query: 210 KESNAFKRKGPTSRAPITKIVQYINDNFKFITLDSLASHFNYHPNYLSNLLKSHFGFGLT 269 ++ ++ + + ++++ I N++ ITL S A Y+ NYLSN +K + F T Sbjct: 211 YLADDLTSAQSSTTSTMLEVIKLIESNYRTITLTSAADTLGYNKNYLSNFIKKNTNFTFT 270 Query: 270 KIVQDLKIKEATMLLKFTNMPIGEIAYEVGYSNITLFYHHFKERHDVTPSVYR 322 ++V K+ A +L++ T+ PI I +VG+SN T FY +K+ ++ P+ R Sbjct: 271 ELVNKQKMLAANLLIETTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPNEVR 323 >celD [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 280 Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 22/290 (7%) Query: 35 IIEVNGISTILEHFLRPGEHFSFFKHPRYLAAPG-HRHDFLEINFVYSGECRQVINGKPV 93 +I I+T E L G++F F + + + G H+HD+ E V +G Q INGK V Sbjct: 5 VINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYFQEINGKRV 64 Query: 94 ILAAGEFCMMDSNVIHSIEKPGDNDIIINLLMSKRYFDIDIMKRLSGNDLMSEFLINSIY 153 +L G+F + H I+N+ +SKR+F+ + L F+ + +Y Sbjct: 65 LLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYLPLLPYC-----FVASQVY 119 Query: 154 RSQDHNDYMIFHSSTNHNARTCMEHSLCESFDPAVGSEEAINCHIILLFTELMRDYKESN 213 R TN+ T +E + G EE + + L R Y+E Sbjct: 120 R-------------TNNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRL-RHYREEQ 165 Query: 214 AFKRKGPTSRAPITKIVQYINDNFKFITLDSLASHFNYHPNYLSNLLKSHFGFGLTKIVQ 273 ++ + K+ + + F L+++ + YL+ + ++G +I+ Sbjct: 166 VIDDVPQWLKSTVEKM--HDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTPMQIIN 223 Query: 274 DLKIKEATMLLKFTNMPIGEIAYEVGYSNITLFYHHFKERHDVTPSVYRK 323 +++I A L+ TN + +IA+E GYS+ +LF FK+ TP YRK Sbjct: 224 EIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRK 273 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 232 YINDNFKF-ITLDSLASHFNYHPNYLSNLLKSHFGFGLTKIVQDLKIKEATMLLKFTNMP 290 Y++D+F+ +TLD LA H P Y+S L K F ++ V L+++ A LL T Sbjct: 423 YVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKS 482 Query: 291 IGEIAYEVGYSNITLFYHHFKERHDVTPSVYRKT 324 + EI YE+GY + F FK+ +PS YRK+ Sbjct: 483 LKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKS 516 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 224 APITKIVQYINDNF-KFITLDSLASHFNYHPNYLSNLLKSHFGFGLTKIVQDLKIKEATM 282 + I K++ YI ++ + ++L LA++F+++P+YLS + H G ++ + ++I++A Sbjct: 400 SSIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKE 459 Query: 283 LLKFTNMPIGEIAYEVGYSNITLFYHHFKERHDVTPSVYRKTN 325 LK + +PI EI VGYS+ + F FK+R + PS YR+ N Sbjct: 460 WLKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRYRREN 502 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 226 ITKIVQYINDNF-KFITLDSLASHFNYHPNYLSNLLKSHFGFGLTKIVQDLKIKEATMLL 284 I ++Q+I+ +F + ++L +L F+ +P YL L + G TK + L+I A LL Sbjct: 405 IQTVLQHIHQHFSQDLSLKTLGHSFHINPIYLGQLFQREVGCSFTKYLNQLRIDRAKKLL 464 Query: 285 KFTNMPIGEIAYEVGYSNITLFYHHFKERHDVTPSVYRKTNK 326 + G+I +VGY + T FY FK+ +TP+ +RK +K Sbjct: 465 LNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEWRKVHK 506 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,560,049 Number of extensions: 918269 Number of successful extensions: 4292 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 4295 Number of HSP's successfully gapped: 32 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)