BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0023.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 248 7e-66 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 239 3e-63 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 239 4e-63 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 207 2e-53 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 204 1e-52 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 190/288 (65%), Gaps = 1/288 (0%) Query: 7 LYVMAIPGIIFLIVFKFIPLAGAVIAFKDYSVFRGFIDSPWVGFKHFETLLQHPDFLRVF 66 LY+M +PG+++ ++FK++P+ G +IAF+DY F G S WVGFKHFE L P F ++ Sbjct: 38 LYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLL 97 Query: 67 SNTLLLGLFKLTIVFPIPVLLALMINEIRKSALKKGIQTALYIPHFLSWVIVGGILFDFF 126 NTL+L L+ L FP+P++LA+++NEIR K+ +QT +YIPHF+SWVIV + + F Sbjct: 98 RNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLF 157 Query: 127 SLS-GMFNIILGWFGAEPVLAMQESAYFRPVYVLASIWKDAGWGTVVYMAAISAIDPQLY 185 + G+ N I+ + V + +FRP+Y+L IW++AGW T++Y AAI+AIDP LY Sbjct: 158 TTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLY 217 Query: 186 ESAMIDGASRFRQIRHIXXXXXXXXXXXXXXXXXGNFLDLGFDQVYNLLTPMTYNVGDIL 245 E+A +DGA+RFRQI HI G+ L+LGF+ V+ +L M V +I Sbjct: 218 EAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIF 277 Query: 246 DTYVFRTGIQQGQYSFATAVGLFQSVIGFIMVYTFNKLSNKVSDGGLW 293 DTYV+ G+++GQ+S++TAVG F+S++G IMV N L+ K + G++ Sbjct: 278 DTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 188/286 (65%), Gaps = 1/286 (0%) Query: 5 WPLYVMAIPGIIFLIVFKFIPLAGAVIAFKDYSVFRGFIDSPWVGFKHFETLLQHPDFLR 64 W L+V+ IP ++ ++F++ P+ G V+AF+DY + GF S WVG +HF T+ ++ + Sbjct: 28 WQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQ 87 Query: 65 VFSNTLLLGLFKLTIVFPIPVLLALMINEIRKSALKKGIQTALYIPHFLSWVIVGGILFD 124 V NTL++ + K+ +P+++AL++NE+ + +K+ +QT +Y+P+FLSWVI+GGIL D Sbjct: 88 VIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILID 147 Query: 125 FFSLS-GMFNIILGWFGAEPVLAMQESAYFRPVYVLASIWKDAGWGTVVYMAAISAIDPQ 183 S G+ N LG FG +P+ + + +FR V++ +WK+ G+ T+V++AAI+A++P Sbjct: 148 VLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPN 207 Query: 184 LYESAMIDGASRFRQIRHIXXXXXXXXXXXXXXXXXGNFLDLGFDQVYNLLTPMTYNVGD 243 LYE+A++DGA+R++Q HI GN L+ GFDQ++NL P+ Y GD Sbjct: 208 LYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGD 267 Query: 244 ILDTYVFRTGIQQGQYSFATAVGLFQSVIGFIMVYTFNKLSNKVSD 289 I+DTYV+R + G +S+ TAVGLF+S+I +++ +L+ K ++ Sbjct: 268 IIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYAN 313 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/277 (42%), Positives = 185/277 (66%), Gaps = 1/277 (0%) Query: 17 FLIVFKFIPLAGAVIAFKDYSVFRGFIDSPWVGFKHFETLLQHPDFLRVFSNTLLLGLFK 76 + ++FK++P+ G +IAFKDYS + GF S WVGF +F+ +PDF R+ NTL+L Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 77 LTIVFPIPVLLALMINEIRKSALKKGIQTALYIPHFLSWVIVGGILFDFFSL-SGMFNII 135 L FP P++LAL++NE+RK+ K+ IQT +Y+PHF+SW IV I F FF++ +G+ N + Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 136 LGWFGAEPVLAMQESAYFRPVYVLASIWKDAGWGTVVYMAAISAIDPQLYESAMIDGASR 195 + E + + ++ +FRP+ V+ SIWK+ GWGT++++AA++ +D + YE+A++DGA R Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 196 FRQIRHIXXXXXXXXXXXXXXXXXGNFLDLGFDQVYNLLTPMTYNVGDILDTYVFRTGIQ 255 FR++ HI G+FL+LGF+QVY + + +V DI DTYV+ GI Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGIT 280 Query: 256 QGQYSFATAVGLFQSVIGFIMVYTFNKLSNKVSDGGL 292 QG YS++TAVGLF+SV+G I+++ N ++ K GL Sbjct: 281 QGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGL 317 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 171/289 (59%), Gaps = 3/289 (1%) Query: 7 LYVMAIPGIIFLIVFKFIPLAGAVIAFKDYSVFRGFIDSPWVGFKHFETLLQHPDFLRVF 66 L +M++P +I+LI+F+++PL G IAF+D+ R D W GFKHF L P F V Sbjct: 48 LLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVL 107 Query: 67 SNTLLLGLFKLTIVFPIPVLLALMINEIRKSALKKGIQTALYIPHFLSWVIVGGILFDFF 126 NTL + L L + F + LA+++NE+R K+ +QT Y+PHFLSWV+ G++ Sbjct: 108 RNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAAL 167 Query: 127 SL-SGMFNIILGWFG--AEPVLAMQESAYFRPVYVLASIWKDAGWGTVVYMAAISAIDPQ 183 S+ +G+ NI+L G +EP++ + YF + + +WK+ GW T++Y+AAI+ ID + Sbjct: 168 SIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTE 227 Query: 184 LYESAMIDGASRFRQIRHIXXXXXXXXXXXXXXXXXGNFLDLGFDQVYNLLTPMTYNVGD 243 YE+A IDGA+R ++I +I G L+ GF+ Y L+ PM + + Sbjct: 228 QYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAE 287 Query: 244 ILDTYVFRTGIQQGQYSFATAVGLFQSVIGFIMVYTFNKLSNKVSDGGL 292 LD +V R GI G +S ATA G+F++V+ FI +++ N ++ ++ + L Sbjct: 288 NLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARL 336 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 172/284 (60%), Gaps = 1/284 (0%) Query: 7 LYVMAIPGIIFLIVFKFIPLAGAVIAFKDYSVFRGFIDSPWVGFKHFETLLQHPDFLRVF 66 L +M +PG++ +FK+IP+ G +IAFKDY+ +G + S W+GF F + P+F + Sbjct: 20 LLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILL 79 Query: 67 SNTLLLGLFKLTIVFPIPVLLALMINEIRKSALKKGIQTALYIPHFLSWVIVGGILFDFF 126 +NTL L ++ L + F P++LA+M+N++ +KK IQ LY P+F+S V++ G++F FF Sbjct: 80 ANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFF 139 Query: 127 SLSGMFNIILGWFGAEPVLAMQESAYFRPVYVLASIWKDAGWGTVVYMAAISAIDPQLYE 186 S+ G N L FG + + +FRP+Y+ + IW+ GW + +Y A + +DP L E Sbjct: 140 SVGGPINNFLSMFGMKADF-LTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVE 198 Query: 187 SAMIDGASRFRQIRHIXXXXXXXXXXXXXXXXXGNFLDLGFDQVYNLLTPMTYNVGDILD 246 +A +DGA+ F++I HI G +++G+++ + + T + +I+ Sbjct: 199 AARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIIS 258 Query: 247 TYVFRTGIQQGQYSFATAVGLFQSVIGFIMVYTFNKLSNKVSDG 290 TYV++ G+ G YS++TAVGLF +VI +++ N++ ++++G Sbjct: 259 TYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNG 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.146 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,754,589 Number of extensions: 763902 Number of successful extensions: 2220 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 2170 Number of HSP's successfully gapped: 99 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)