BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0022.p (534 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 105 1e-22 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 103 8e-22 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 88 5e-17 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 80 7e-15 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 62 3e-09 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 35/269 (13%) Query: 92 YVEW-NGGTNYLNQLNLKIAANEMPDLFLPQQGLED----SLARNGALADLTELLPKYAP 146 +++W N +++ + NL I++ ++PD + G D + A+ G + + +L+ KY P Sbjct: 79 HIDWTNYQSDFAEKRNLDISSGDLPDA-IHNDGASDVDLMNWAKKGVIIPVEDLIDKYMP 137 Query: 147 NLWNAIPQDMWDIVKANDPTGQGKIYYIPGMVDYG---------RYAGMIRQDWLDKLGL 197 NL + D KA G IY P + + G I +DWL KLGL Sbjct: 138 NLKKIL--DEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGL 195 Query: 198 QMPTTQEEYVKVLEAFRDNDPNGNGQKDELPTG-----GREQARWMDHLFAMYGVAMFEG 252 +MP T ++ +KVLEAF++ DPNGNG+ DE+P G E ++ LFA +G+ + Sbjct: 196 EMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFSFISGNGNEDFKF---LFAAFGIGDNDD 252 Query: 253 YPDWDNYNGELTYAAVTPNMKASLEFLNKLYKEGLIDKESLLNSKDKWDGKIQSDKVGNY 312 + N +G++ + A N K ++F+ +L ++GLIDKE+ + + + K K G Y Sbjct: 253 HLVVGN-DGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVY 311 Query: 313 FHWVESGYLPLENLYKNTGVKANFTVLPV 341 F W ++ TG ++ VLPV Sbjct: 312 FTWDKNNV---------TGSNESYDVLPV 331 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 103 bits (256), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 127/463 (27%), Positives = 208/463 (44%), Gaps = 52/463 (11%) Query: 93 VEWNGGTNYLNQLNLKIAANEMPDLFL---PQQGLEDSLARNGALADLTELLPKYAPNLW 149 V W ++Y ++ N+ +A+ EMP + G S+ + GA +L+ L Y NL Sbjct: 70 VTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSAGFIKSV-KAGAFWELSPYLKDYK-NLS 127 Query: 150 NAIPQDMWDIVKANDPTGQGKIYYIPGMVDYGRYAGMIRQDWLDKLGLQMPTTQEEYVKV 209 A + I+K + + G++Y I D R +IR DWL +GL MP T +++ +V Sbjct: 128 QADEK----ILK--NSSVNGEVYGIYRTRDLIRACMIIRTDWLKNVGLDMPETLDDFYEV 181 Query: 210 LEAFRDNDPNGNGQKDELPTGGREQARWM--------DHLFAMYGVAMFEGYPDWDNYNG 261 L+AF++ DP+GNG+ D T G +WM D L +G G NG Sbjct: 182 LKAFKEKDPDGNGKDD---TYGMVVPKWMGLGNGSPWDVLQIWFGAPNRYGVE-----NG 233 Query: 262 ELTYAAVTPNMKASLEFLNKLYKEGLIDKESLLNSKDKWDGKIQSDKVGNYFHWVESGYL 321 +L T +L F KLY EGLI+K+ + KW+ + K G V++G Sbjct: 234 KLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPVVKGKAGVI---VDTGSR 290 Query: 322 P--LENLYKNTGVKANFTVLPVPKVEGYEGFYSWKR------FTPPAWVVKNNKDEKKLM 373 +++ + + V +EG G ++ T P VK EK+L Sbjct: 291 ASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTSGYSGMITIPKSSVKT---EKELK 347 Query: 374 ATLKLLNNMYDEKVWKDLYLGVEGMHYTVKDGQATRLPDDKSTQENLILDPYSKISTLDF 433 L L+ M D++ GV+G +Y +KDG T L +K+ + L Y F Sbjct: 348 EVLSFLDKMNDKEAQILTNNGVKGRNYELKDGVFTSL--EKNNKSLL----YEHEGLAQF 401 Query: 434 MMDLNKST-ASEDRMWAIDQVNRN-MQEAQKYAKVIAGDGMPASVY-DGFPDINNRTLYV 490 M + KS ED+ + Q ++ + E +K A + + + VY ++N + + Sbjct: 402 SMSIPKSEYYIEDQKTKLFQHRKDIITEGEKIAVFNPAESLVSDVYTQKGAQLDN--IIL 459 Query: 491 EYASKIILGQYPLSKFDEFVDKWNKSGGEEVTKRAREWYAKVK 533 + ++ I+G+ FD+ V+ W KSGG E+ K + Y K Sbjct: 460 DARTQFIIGEIDEKGFDDAVELWKKSGGNELMKDLNKLYQSSK 502 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 125/519 (24%), Positives = 221/519 (42%), Gaps = 104/519 (20%) Query: 81 KEKLGVGVIHPYVEWNGGTNYLNQLNLKIAANE-MPDLF-LPQQGLEDSLARNGALADLT 138 +E+LG+ + + + N + QL L +++ E +PD+F + ++ L +G + + Sbjct: 71 EEELGIKFVTEWTQPND-EQFNTQLRLMMSSGEKLPDVFQVNDTAIKADLLSSGLVMPVD 129 Query: 139 ELLPKYAP----NLWNAIPQDMWDIVKANDPTGQGKIYYIPGMVDYGRYAGM-------- 186 E + YA L+ PQ + K G Y IP R++G Sbjct: 130 EAIETYASPRLKQLFEQFPQAFYPSTK------DGVRYGIP------RFSGGNGSDTLLW 177 Query: 187 IRQDWLDKLGLQMPTTQEEYVKVLEAFRDNDPNGNGQKDELPT-----------GGREQA 235 IRQDWLDK L+ PTT EE +++ F + DPN G+ D + G + Sbjct: 178 IRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDTIGITFAAGDYGFRGGNIADS 237 Query: 236 RWMDHLFAMYGVAMFEGYPDWDNYNGELTYAAVTPNMKASLEFLNKLYKEGLIDKE-SLL 294 W +F +G + + D +G L Y ++ P+MK L +++ Y++G + + ++L Sbjct: 238 SW---VFGAFGDFVPGAWSKGD--DGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDFAIL 292 Query: 295 NSKDKWDGKIQSDK-VGNYFHWVESGYLPLENLYKNTGVKANFTVLPVPKVEGYEGFYSW 353 ++ D + I + W GY P+ + + V + V P P V G G + Sbjct: 293 SAGDAQESFISGRSGIMAAPPWAH-GY-PIGEMAQ---VVPDAIVKPFPHVSGPNG-QAG 346 Query: 354 KRFTPPAWVVKN---NKDEKKLMATLKLLNNMYDEKVWKDLYLG---VEGMHYTVKDGQA 407 +R +VV + NKD + + + + +Y + Y EG Y ++DG+ Sbjct: 347 RR--GEGYVVGSFLFNKDFEHMDKFFEYWDAIYGYTFGESDYFEYGLFEGYDYVMEDGEP 404 Query: 408 TRLPDDKSTQENL----ILDPY-----SKISTLDF----MMDLNKSTASE---------- 444 D + E + ++DP + + T+ F +++ T E Sbjct: 405 VY---DHAQFEEITGEEVVDPGRYFLPTNVPTIPFEMYSLLEEFHETGREPETGYEAGLA 461 Query: 445 ----DRMWAIDQVNRNMQEAQKYAKVIAGDGMPASVYDGFPDINNRTLYVEYAS-----K 495 D + A VNR Q ++I P + P + +R+ ++E Sbjct: 462 GRDPDYIEAAAIVNR-----QNDLRIINEFNGPPT-----PTMVSRSEHLERMEDELFVD 511 Query: 496 IILGQYPLSKFDEFVDKWNKSGGEEVTKRAREWYAKVKK 534 II G PL FD+FV++W +SGGE +T+ EWY V++ Sbjct: 512 IIYGNKPLDAFDQFVEEWRQSGGEAITEEVNEWYESVQQ 550 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 33/318 (10%) Query: 103 NQLNLKIAANEMPDLFLPQQGLEDSLA---RNGALADLTELLPKYAPNLWNAIPQDMWDI 159 +++N +A+ +P + Q S+ R+G ++ L ++ PNL +M + Sbjct: 94 DRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFWEIGPYLDEF-PNL-----SEMNET 147 Query: 160 VKANDPTGQGKIYYIPGMVDYGRYAGMIRQDWLDKLGLQMPTTQEEYVKVLEAFRDNDPN 219 + N + GKIY I R +IRQDWL+ LGL+MPT EE +V AF +DPN Sbjct: 148 ILEN-VSVDGKIYGIYRERPLSRQGVVIRQDWLENLGLEMPTNLEELYEVARAFTYDDPN 206 Query: 220 GNGQKDELPTGGREQARWMDHLFAMY-GVAMFEGYPDWDNYN--GELTYAAVTPNMKASL 276 G+G D + R D +F + +A + G P+ ++ G+L +T ++ Sbjct: 207 GSGADDTVGFTDRN-----DLIFGAFKTLASYHGTPNEWGFDDEGKLMPEFMTDEYVETM 261 Query: 277 EFLNKLYKEGLIDKESLLNSKDKWDGKIQSDKVGNYFHWVESGYLPLENLY-KNTGVKAN 335 ++ LY EGLI+ E + SK++ + + G Y + NL K + Sbjct: 262 NYMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYV----GNMVDARNLRDKAKDINPE 317 Query: 336 FTVLPVPKVEGYEGF-YSWKR------FTPPAWVVKNNKDEKKLMATLKLLNNMYDEKVW 388 V ++ G +G W + F P V+ + K+++A + + +E V+ Sbjct: 318 MEVAITNRIAGPDGEDRVWAQGGHNGIFAIPKSSVETEAELKRILA---FFDRIAEEDVY 374 Query: 389 KDLYLGVEGMHYTVKDGQ 406 + G+E +HY DG+ Sbjct: 375 NLMAYGIEDVHYETIDGE 392 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 32/310 (10%) Query: 103 NQLNLKIAANEMPDLFLPQQGLEDSLA---RNGALADLTELLPKYAPNLWNAIPQDMWDI 159 ++LN +AA +P + Q S+ R+G ++ + + Y PNL M + Sbjct: 74 DRLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMFWEIGDYIKDY-PNL-----NKMNKL 127 Query: 160 VKANDPTGQGKIYYIPGMVDYGRYAGMIRQDWLDKLGLQMPTTQEEYVKVLEAFRDNDPN 219 + N T GK+Y I R +IR+DWLD L L+ P T +E +V +AF ++DP+ Sbjct: 128 INKN-VTIDGKLYGIYRERPLSRQGIVIRKDWLDNLNLKTPKTLDELYEVAKAFTEDDPD 186 Query: 220 GNGQKDELPTGGREQARWMDHLFAMY-GVAMFEGYP-DWDNYNGELTYAAVTPNMKASLE 277 +G+ D R D ++ + + +EG P DW G+ T +T K ++ Sbjct: 187 KDGKDDTFGLADRN-----DLIYGAFKTIGSYEGMPTDWKESGGKFTPDFMTQEYKDTMN 241 Query: 278 FLNKLYKEGLIDKESLLNSKDKWDGKIQSDKVGNYFHWVESGYLPLENLYKNTGVKANFT 337 ++ KL G ++K+ + SK + K G Y + NL + K+ Sbjct: 242 YMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYI----GNMVDAVNLRDHASDKS-MK 296 Query: 338 VLPVPKVEGYEGFYS-WKR------FTPPAWVVKNNKDEKKLMATLKLLNNMYDEKVWKD 390 + + +++G +G W F P VK + K+++A + + +E V+ Sbjct: 297 LEIINRIKGPDGKERVWASGGHNGVFAFPKTSVKTEAELKRILA---FFDRIAEEDVYSL 353 Query: 391 LYLGVEGMHY 400 + G++G+HY Sbjct: 354 MTYGIDGVHY 363 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,651,551 Number of extensions: 1877105 Number of successful extensions: 2191 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 2182 Number of HSP's successfully gapped: 7 Length of query: 534 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 423 Effective length of database: 25,576,357 Effective search space: 10818799011 Effective search space used: 10818799011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)