BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0019.p
         (241 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0447 [S] COG4200 Uncharacterized protein conserved in bacteria       84   3e-16
BH0450 [S] COG4200 Uncharacterized protein conserved in bacteria       63   5e-10

>BH0447 [S] COG4200 Uncharacterized protein conserved in bacteria
          Length = 247

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 8   EWPKLRHSRMGLVLASLPVISLLIGCFNFYFNQEALQNGWYSLWTQVSLFYGEFFLPILI 67
           EW KL+H ++ +++ + P+++ +IG F  YF  +A +  W +L TQ+ L +   FLP+L 
Sbjct: 9   EWNKLKHMKVWIIVIAGPLLASVIGFFP-YFTIDASE--WIALATQMILAHSALFLPLLT 65

Query: 68  AICCAFVCRLEHVNRNWNMILAAPVPITSIFLAKLAIVGILIAGAQVSFLILYWTAG--Q 125
            I  A +C  EH +  W  +LA PV    +++AK  ++  L+   Q+ F    W  G  +
Sbjct: 66  GIYAALICSYEHQHGGWKQLLALPVERYHVYIAKFVVIITLLLLTQIVFFFSVWLVGVAR 125

Query: 126 MLSIMEPFPMEIILWTFRGWVASITIAALQLGLSIRIRSFATP 168
             SI     M +++    G+++ + +AALQL L+ R  SFA P
Sbjct: 126 GYSISSFTYMPLLVSVLAGFLSCLPLAALQLWLATRFTSFAAP 168


>BH0450 [S] COG4200 Uncharacterized protein conserved in bacteria
          Length = 252

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 15/245 (6%)

Query: 3   RSVAAEWPKLRHSRMGLVLASLPVISLLIGCFNF------YFNQEALQNGWYSLWTQVSL 56
           +S  AEW K+R S + LV+  L  + +  GC  F       +N     + W      V +
Sbjct: 6   QSFMAEWMKIRKSTIWLVILGLVALPVFYGCIIFTQIVVKQYNYTD-SDPWLMQLMMVQM 64

Query: 57  FYGEFFLPILIAICCAFVCRLEHVNRNWNMILAAPVPITSIFLAKLAIVGILIAGAQVSF 116
           FYG  FLPI+++I    V   E     W  +   P+   + +L+K+A V IL A AQ+  
Sbjct: 65  FYGTIFLPIIVSIIIETVLNFERKANEWEHLFLFPIKRNTFYLSKMAWVFILTALAQLLM 124

Query: 117 LILYWTAGQMLSIMEPFPMEIILWTF-RGWVASITIAALQLGLSIRIRS----FATPIGI 171
             +   AG ++ I    P+   L  F  G + +I++ +L   L + I+S     A  I +
Sbjct: 125 FTMVVIAGIVIKIDTTIPVLSYLSVFILGTIGAISLGSLLFYLFMLIKSSRVALAISIFL 184

Query: 172 SLCAVFIXXXXXXXXXXXXFPYSLLTIGMGVLTQRGLTLAENLLFFIMNGVYIVLLSVWS 231
           S  A               +P++L   GM   TQ   +++  L+F  +  + I+L S  +
Sbjct: 185 SFPAFLALSNESGSWLPSLYPWALPIYGM---TQSMSSVSSLLVFLGVCFILIILSSFLT 241

Query: 232 IRRLR 236
           I+RL+
Sbjct: 242 IKRLK 246


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.333    0.145    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,810,282
Number of extensions: 570786
Number of successful extensions: 1917
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 138
Effective length of database: 26,499,029
Effective search space: 3656866002
Effective search space used: 3656866002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 114 (48.5 bits)