BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0009.p (231 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 231 1e-60 BH1153 [TK] COG0745 Response regulators consisting of a CheY-lik... 199 4e-51 lin2516 [TK] COG0745 Response regulators consisting of a CheY-li... 192 3e-49 BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-li... 191 8e-49 STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases 190 2e-48 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 110/227 (48%), Positives = 159/227 (70%), Gaps = 1/227 (0%) Query: 5 ILVVDDEQAITDLIEIYLKNENYKVTKFYNAQDALKYIESARVDLAILDIMLPDMNGFAL 64 +LVVDDE+ I DLI IYL NE + V K N +AL+ ++ V L +LDIM+P M+G Sbjct: 6 VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65 Query: 65 CRRIRENYHFPVIMLTAKDEETDKITGLTMGADDYMTKPFRPLEMVARVKAQLRRYKKYQ 124 C +IRE+ + P+IML+AK E+ DKI GLT GADDY++KPF PLE++ARVK+Q+RRY K Sbjct: 66 CMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKLN 125 Query: 125 TMPTPDEAVISYSGLVMDVNTHECWLNGQPLSLTPTEFSILRVLCENKGKVISSEQLFHA 184 + + A I + ++ +THE + + +SLT EF IL +L NKG V S+E+++ + Sbjct: 126 STYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYES 185 Query: 185 VWGNEYYNKNNNTITVHIRHLREKMNDSVDQPKWIRTIWGVGYKIEK 231 VW E+Y+ +NT+ VHIR +REK+ + +P++I+T+WGVGYKIEK Sbjct: 186 VWHEEFYD-CHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEK 231 >BH1153 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 146/228 (64%), Gaps = 1/228 (0%) Query: 4 NILVVDDEQAITDLIEIYLKNENYKVTKFYNAQDALKYIESARVDLAILDIMLPDMNGFA 63 N+LVVDD++ I + I IYLKNE V + + +AL+ + + L +LD+M+P ++G Sbjct: 6 NVLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQ 65 Query: 64 LCRRIRENYHFPVIMLTAKDEETDKITGLTMGADDYMTKPFRPLEMVARVKAQLRRYKKY 123 +IRE + P+I L+AK EE DK+ GL +G DDY+TKPF PLE++ARVK+QLRRY Sbjct: 66 TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125 Query: 124 QTMPTPDEAVISYSGLVMDVNTHECWLNGQPLSLTPTEFSILRVLCENKGKVISSEQLFH 183 T + +I+ +G+ +D++ E G+P+ LTP E+ I+ +L N G+V S +++ Sbjct: 126 GTYEQKKQ-LINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYE 184 Query: 184 AVWGNEYYNKNNNTITVHIRHLREKMNDSVDQPKWIRTIWGVGYKIEK 231 VW + + NT+ VHIR +REK+ P+ ++ +WG+GYK+E+ Sbjct: 185 RVWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKMER 232 >lin2516 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 231 Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 145/232 (62%), Gaps = 4/232 (1%) Query: 1 MVENILVVDDEQAITDLIEIYLKNENYKVTKFYNAQDALKYIESARVDLAILDIMLPDMN 60 M +IL+ DD++ I DL+++YL+NE Y + + Y+ + + ++ + L ILDIM+P+MN Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GFALCRRIRENYHF-PVIMLTAKDEETDKITGLTMGADDYMTKPFRPLEMVARVKAQLRR 119 G +CR +R N P++ML+AK E+ DKI GL GADDYM KPF PLE+ RVKA LRR Sbjct: 61 GLEVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120 Query: 120 YKKY-QTMPTPDEAVISYSGLVMDVNTHECWLNGQPLSLTPTEFSILRVLCENKGKVISS 178 ++ Q P + VI +V+D H + + L LT +EF IL +L G+V SS Sbjct: 121 MQQMSQAEPVSQDKVI-IGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSS 179 Query: 179 EQLFHAVWGNEYYNKNNNTITVHIRHLREKMNDSVDQPKWIRTIWGVGYKIE 230 E +F +W E + T+ VHI +LR+K+ D++ I+TIWGVGYKIE Sbjct: 180 EYIFEKIW-QEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 215 Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 0/224 (0%), Positives = 0/224 (0%), Gaps = 1/224 (0%) Query: 6 LVVDDEQAITDLIEIYLKNENYKVTKFYNAQDALKYIESARVDLAILDIMLPDMNGFALC 65 + L VD + L +M + L Sbjct: 1 MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDDSGLTLMQILLTHGHLD 60 Query: 66 RRIRENYHFPVIMLTAKDEETDKITGLTMGADDYMTKPFRPLEMVARVKAQLRRYKKYQT 125 + E + L + + + Sbjct: 61 HVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGDTISIG 120 Query: 126 MPTPDEAVISYSGLVMDVNTHECWLNGQPLSLTPTEFSILRVLCENKGKVISSEQLFHAV 185 T V + + + S + Sbjct: 121 NVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQLISSIKDKLL 180 Query: 186 WGNEYYNKNNNTITVHIRHLREKMNDSVDQPKWIRTIWGVGYKI 229 + Sbjct: 181 PLGDDVI- 223 >STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 457 Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 10/230 (4%), Positives = 34/230 (14%), Gaps = 4/230 (1%) Query: 3 ENILVVDDEQAITDLIEIYLKNENYKVTKFYNAQDALKYIESARVDLAILDIMLPDMNGF 62 L E ++ + + A L + Sbjct: 12 AAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQ 71 Query: 63 ALCRRIR--ENY-HFPVIMLTAKDEETDKITGLTMGADDYMTKPFRPLEMVARVKAQLRR 119 + L LT+ L+ + Sbjct: 72 TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 120 YKKYQTMPTPDEAVISYSGLVMDVNTHECWLNGQPLSLTPTEFSILRVLCENKGKVISSE 179 + ++ + + + R + Sbjct: 132 RLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAI 191 Query: 180 QLFHAVWGNEYYNKNNNTITVHIRHLREKMNDSVDQPKWIRTIWGVGYKI 229 + + + ++ ++ K + Sbjct: 192 AAISGRVQQQPIR-IEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQ 240 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,507,293 Number of extensions: 697553 Number of successful extensions: 2639 Number of sequences better than 1.0e-05: 471 Number of HSP's gapped: 2132 Number of HSP's successfully gapped: 471 Length of query: 231 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 128 Effective length of database: 26,499,029 Effective search space: 3391875712 Effective search space used: 3391875712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)