BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0004.p
         (391 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3042 [G] COG3594 Fucose 4-O-acetylase and related acetyltrans...   101   2e-21
mlr0961 [G] COG3594 Fucose 4-O-acetylase and related acetyltrans...    63   1e-09
mll4680 [G] COG3594 Fucose 4-O-acetylase and related acetyltrans...    51   4e-06

>CAC3042 [G] COG3594 Fucose 4-O-acetylase and related acetyltransferases
          Length = 337

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 151/293 (51%), Gaps = 17/293 (5%)

Query: 46  RLKVIDMVRGITILLVVVGHAGLTPVVLNDMFRDFRLPLFFIVSGYLFSASKYFDNFTAL 105
           R K ID+ +GI ILLV++GH  + P ++      F +PLFF++SGYL++A KY   +T+ 
Sbjct: 3   RTKSIDIAKGIGILLVLLGHRSI-PNIMVKFIYSFHMPLFFVISGYLYNADKY-TEYTSY 60

Query: 106 LRTRILTLVVPYLSAGFLCYLLWLILRTLEPTHN--SGIAWYEPMQAIALGTYSGGLLLN 163
           ++ +  T+++PY+S     +++ LI+  +    N    +++ + +      T SG    N
Sbjct: 61  IKHKFRTIIIPYIS----FWIISLIVEVIAMNFNILDKLSFRQAVSEFFYLTPSG--FWN 114

Query: 164 IPIWFLTCLFVTQIIFCLSMRYLSXXXXXXXXXXXXXXXXXXXXXXTVVFLPWNIDVALV 223
            P+WFL CLFV  +++   +  LS                        V+LP  +D+A  
Sbjct: 115 GPLWFLMCLFVVCVLY-YPISKLSRNKWIMVPFILIFLALGWSTSVFKVYLPLKLDIAFT 173

Query: 224 AQLFVFIGYQLKQRQMLRKIR-VFNLGTLVWMALFLTAAYFNSYVDMNNREYGNLFLFYT 282
             +F  +G  +K  ++  KI  V  L  ++ + L L+ A  NS V M    YG   +F  
Sbjct: 174 GLVFYALGNFIKGVKINIKINTVPVLFIMLALTLVLSVAN-NSIVQMIVGRYGIYPMFIL 232

Query: 283 AGIAGSLLAIKMTQLLSTSRFFAATLTYIGQESLAILIFHYGIFILLLNFVER 335
           A IAGS+  I  + L+  S+     L ++G+ SL I+  H+ +FI++L+ +++
Sbjct: 233 AAIAGSMTVIIFSNLIRESKL----LEWLGKNSLFIMGLHFIVFIVILDPIQK 281


>mlr0961 [G] COG3594 Fucose 4-O-acetylase and related acetyltransferases
          Length = 301

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 15/289 (5%), Positives = 39/289 (13%), Gaps = 29/289 (10%)

Query: 50  IDMVRGITILLVVVGH-AGLTPVVLNDMFRD----FRLPLFFIVSGYLFSASKYFDNFTA 104
              +  +    V               +        R  +  I +   + A         
Sbjct: 8   CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI----YVDT 63

Query: 105 LLRTRILTLVVPYLSAGFLCYL-LWLILRTL----EPTHNSGIAWYEPMQAIALGTYSGG 159
                     +  L             +  +    E T      W        +      
Sbjct: 64  PGLHMEEKRAINRLM--NKAASSSIGDVELVIFVVEGTR-----WT--PDDEMVLNKLRE 114

Query: 160 LLLNIPI---WFLTCLFVTQIIFCLSMRYLSXXXXXXXXXXXXXXXXXXXXXXTVVFL-- 214
               + +             ++  L                             V     
Sbjct: 115 GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174

Query: 215 -PWNIDVALVAQLFVFIGYQLKQRQMLRKIRVFNLGTLVWMALFLTAAYFNSYVDMNNRE 273
              +                 +  +      +                         N  
Sbjct: 175 EATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGL 234

Query: 274 YGNLFLFYTAGIAGSLLAIKMTQLLSTSRFFAATLTYIGQESLAILIFH 322
                      + G+  A   T  +   +             L + +  
Sbjct: 235 ILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 283


>mll4680 [G] COG3594 Fucose 4-O-acetylase and related acetyltransferases
          Length = 301

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 7/142 (4%), Positives = 22/142 (15%), Gaps = 16/142 (11%)

Query: 46  RLKVIDMVRGITILLVVVGH-AGLTPVVLNDMFRD----FRLPLFFIVSGYLFSASKYFD 100
                  +  +    V               +        R  +  I +   + A     
Sbjct: 4   DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-- 61

Query: 101 NFTALLRTRILTLVVPYLSAGFLCYLLWLILRTLEPTHNSGIAWYEPMQAIALGTYSGGL 160
                         +  L        +  +   +      G  W        +       
Sbjct: 62  --DTPGLHMEEKRAINRLMNKAASSSIGDVELVI--FVVEGTRWT--PDDEMVLNKLREG 115

Query: 161 LLNIPI---WFLTCLFVTQIIF 179
              + +             ++ 
Sbjct: 116 KAPVILAVNKVDNVQEKADLLP 137


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.333    0.145    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 23,468,191
Number of extensions: 816048
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3196
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 283
Effective length of database: 25,922,359
Effective search space: 7336027597
Effective search space used: 7336027597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 117 (49.7 bits)