BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0011.p
         (99 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0224 [TK] COG0745 Response regulators consisting of a CheY-li...    86   1e-17
CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li...    86   2e-17
BH0755 [TK] COG0745 Response regulators consisting of a CheY-lik...    83   1e-16
SP2082 [TK] COG0745 Response regulators consisting of a CheY-lik...    77   7e-15
Rv0491 [TK] COG0745 Response regulators consisting of a CheY-lik...    76   1e-14

>CAC0224 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 223

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 1   LILLDINLGQTSGFELCKRLRKTMKAPILFISARSSDDDILIALNIGGDDYTHKPYTLSV 60
           L+L+DINL    GF  C ++R   K P++F+S+RSS+ D+++A+N+GGDDY  KP+++ +
Sbjct: 48  LVLMDINLPVCDGFYWCSKIRNISKVPVIFLSSRSSNMDVVMAVNMGGDDYITKPFSIEI 107

Query: 61  LLAKVRAVLKRYGGQYTVEAPEILEFGKV 89
           L+AK+ A+L+R    Y+    + +EF  V
Sbjct: 108 LMAKINAILRR-TYSYSETEMDTIEFKDV 135


>CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 228

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 59/84 (70%)

Query: 1   LILLDINLGQTSGFELCKRLRKTMKAPILFISARSSDDDILIALNIGGDDYTHKPYTLSV 60
           L+LLD+NL    GF LC+  R+  KAPI+F+SARSS+ + +  L +G DDY  KP++  +
Sbjct: 48  LVLLDVNLPYYDGFNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFEL 107

Query: 61  LLAKVRAVLKRYGGQYTVEAPEIL 84
           LLAKV+A ++R  G+Y+ +  E+L
Sbjct: 108 LLAKVQASIRRTYGEYSEDNSEVL 131


>BH0755 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 232

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query: 1   LILLDINLGQTSGFELCKRLRKTMKAPILFISARSSDDDILIALNIGGDDYTHKPYTLSV 60
           L+LLDINL    GF  C++LR+    PI+F+SAR+S+ D + A+  GGDDY  KP+ L V
Sbjct: 48  LVLLDINLPAFDGFYWCRQLRRLSNLPIIFLSARASEMDQVYAIENGGDDYITKPFHLEV 107

Query: 61  LLAKVRAVLKRYGGQYTV 78
           LLAKV+ VL+R  G Y +
Sbjct: 108 LLAKVKGVLRRSYGDYAI 125


>SP2082 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 235

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1   LILLDINLGQTSGFELCKRLR-KTMKAPILFISARSSDDDILIALNIGGDDYTHKPYTLS 59
            ILLDI L Q  G E+CKRLR K +K PI+ +SA+S + D ++AL +G DDY  KP++  
Sbjct: 49  FILLDIMLPQLDGMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPR 108

Query: 60  VLLAKVRAVLKRYGGQ 75
            LLA+V+AVL+R  G+
Sbjct: 109 ELLARVKAVLRRTKGE 124


>Rv0491 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 227

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 58/90 (64%)

Query: 1   LILLDINLGQTSGFELCKRLRKTMKAPILFISARSSDDDILIALNIGGDDYTHKPYTLSV 60
           ++LLD+ L   SG ++CK+LR     P++ ++AR S+ D ++ L +G DDY  KPY+   
Sbjct: 48  IVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARE 107

Query: 61  LLAKVRAVLKRYGGQYTVEAPEILEFGKVR 90
           L+A++RAVL+R G   +  +  +LE G VR
Sbjct: 108 LIARIRAVLRRGGDDDSEMSDGVLESGPVR 137


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.142    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,161,257
Number of extensions: 268733
Number of successful extensions: 1089
Number of sequences better than 1.0e-05: 229
Number of HSP's gapped: 1091
Number of HSP's successfully gapped: 229
Length of query: 99
Length of database: 38,378,431
Length adjustment: 68
Effective length of query: 31
Effective length of database: 30,535,719
Effective search space: 946607289
Effective search space used: 946607289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)