BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0010.p
         (78 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhfP [CR] COG0604 NADPH:quinone reductase and related Zn-depe...   108   2e-24
lin0767 [CR] COG0604 NADPH:quinone reductase and related Zn-depe...    79   2e-15
RSc2891 [CR] COG0604 NADPH:quinone reductase and related Zn-depe...    75   3e-14
ZyhdH [CR] COG0604 NADPH:quinone reductase and related Zn-depend...    70   9e-13
ECs4125 [CR] COG0604 NADPH:quinone reductase and related Zn-depe...    70   9e-13

>BS_yhfP [CR] COG0604 NADPH:quinone reductase and related Zn-dependent
           oxidoreductases
          Length = 346

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 6/77 (7%), Positives = 13/77 (16%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
              T+     R         VA  ++   +     A                 L      
Sbjct: 254 ARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMD 313

Query: 61  LEDILTSNTRGRVLVRL 77
                  +    +   +
Sbjct: 314 QLKTNIESLHLELSEDV 330


>lin0767 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent
           oxidoreductases
          Length = 346

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 3/74 (4%), Positives = 14/74 (18%), Gaps = 1/74 (1%)

Query: 4   TVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAALED 63
             L       S               +      + +    +        +       ++ 
Sbjct: 256 NTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPF-VASTLLGATTMDQ 314

Query: 64  ILTSNTRGRVLVRL 77
           + T+     + +  
Sbjct: 315 LKTNIESLHLELSE 328


>RSc2891 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent
           oxidoreductases
          Length = 346

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 4/74 (5%), Positives = 10/74 (13%), Gaps = 1/74 (1%)

Query: 2   PATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAAL 61
                    +      +D          Q+               L+             
Sbjct: 262 FTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVAS-TLLGATTMDQLKTNIE 320

Query: 62  EDILTSNTRGRVLV 75
              L  +      +
Sbjct: 321 SLHLELSEDVLAEI 334


>ZyhdH [CR] COG0604 NADPH:quinone reductase and related Zn-dependent
           oxidoreductases
          Length = 346

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 4/78 (5%), Positives = 7/78 (8%), Gaps = 1/78 (1%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
                                         +       L      AL             
Sbjct: 248 GAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGL-DPAQMALAFVRRQPFVASTL 306

Query: 61  LEDILTSNTRGRVLVRLS 78
           L        +  +     
Sbjct: 307 LGATTMDQLKTNIESLHL 324


>ECs4125 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent
           oxidoreductases
          Length = 346

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 4/78 (5%), Positives = 7/78 (8%), Gaps = 1/78 (1%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
                                         +       L      AL             
Sbjct: 248 GAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGL-DPAQMALAFVRRQPFVASTL 306

Query: 61  LEDILTSNTRGRVLVRLS 78
           L        +  +     
Sbjct: 307 LGATTMDQLKTNIESLHL 324


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,269,914
Number of extensions: 160281
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 14
Length of query: 78
Length of database: 38,378,431
Length adjustment: 49
Effective length of query: 29
Effective length of database: 32,727,065
Effective search space: 949084885
Effective search space used: 949084885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)