BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0006.p
         (181 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yqaC [F] COG0563 Adenylate kinase and related kinases              206   2e-53
DR0974 [F] COG0563 Adenylate kinase and related kinases               120   1e-27

>BS_yqaC [F] COG0563 Adenylate kinase and related kinases
          Length = 178

 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 121/172 (70%)

Query: 1   MYSRIHIMGASGAGTSTLGRALAGHLPHVHLDSDDYFWEHKYTQQTELTERLRTIQRDLD 60
           M   IHI+GASG GTSTLG AL+  LPH HLD+D+Y+W  K+T++ E+ ER + +++DL 
Sbjct: 1   MKKNIHILGASGVGTSTLGAALSKRLPHTHLDTDNYYWLDKFTKKREIPERRKLLEKDLT 60

Query: 61  QQEPYILSGAVCGWGDGLRPRFDLVVFLWIPPXXXXXXXXXXXXXXYGADSLPGGSMYQE 120
             E +ILSGAVCGWGD L+  FDLVVFLWIP               YG + L GGS Y++
Sbjct: 61  INEKWILSGAVCGWGDNLKSYFDLVVFLWIPQDIRLERLRHREFQRYGNEVLAGGSKYEQ 120

Query: 121 VQTFMEWAALYDTAGPEVRSRVLHEEWMSHLQCPVLRLEEDMTVAARVEAVL 172
            +TF+EWA+LYD AG EVRSR LHE WM+ L CPVL++E+D +V  RV+ VL
Sbjct: 121 SKTFLEWASLYDNAGMEVRSRALHEHWMADLSCPVLKIEDDCSVNERVDRVL 172


>DR0974 [F] COG0563 Adenylate kinase and related kinases
          Length = 195

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 4/178 (2%)

Query: 4   RIHIMGASGAGTSTLGRALAGHLPHVHLDSDDYFW---EHKYTQQTELTERLRTIQRDLD 60
           R+H++GASGAGT+TLGR LA  L   H ++DD+FW   +  Y  +    +RL  ++  L 
Sbjct: 16  RLHVLGASGAGTTTLGRDLAAALQLGHFETDDFFWAPSDPPYHVKRAPEQRLSLLREALV 75

Query: 61  QQEPYILSGAVCGWGDGLRPRFDLVVFLWIPPXXXXXXXXXXXXXXYGADSLPGGSMYQE 120
             + ++LSG++CGWGD L   FD V+F+ +P               +GA    GG+M++ 
Sbjct: 76  DGDGWVLSGSLCGWGDPLMAEFDAVIFVTLPTPLRLERTRQRERARFGAQLDEGGAMHRR 135

Query: 121 VQTFMEWAALYDTAGPEV-RSRVLHEEWMSHLQCPVLRLEEDMTVAARVEAVLREYAA 177
              FM W+A  D     V RSR++HE W++ L CPV+R++   T A  +  VL   +A
Sbjct: 136 QLDFMAWSAGDDDPASSVGRSRLVHEAWLARLSCPVVRVDNAGTQADTLGEVLARLSA 193


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,678,178
Number of extensions: 467301
Number of successful extensions: 2805
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2804
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 81
Effective length of database: 26,845,031
Effective search space: 2174447511
Effective search space used: 2174447511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)