BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0029.p
         (141 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1120 [I] COG2030 Acyl dehydratase                                   65   3e-11
RSc2043 [I] COG2030 Acyl dehydratase                                   64   6e-11
mlr2698 [I] COG2030 Acyl dehydratase                                   61   5e-10
mll6685 [I] COG2030 Acyl dehydratase                                   58   5e-09
SMc02696 [I] COG2030 Acyl dehydratase                                  57   9e-09

>RSp1120 [I] COG2030 Acyl dehydratase
          Length = 346

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 2/85 (2%), Positives = 16/85 (18%)

Query: 27  FAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMAVSFKLWVETGSYGDDIIAGTAMNHLK 86
            A   +   +        +    G+  + +           +              +   
Sbjct: 40  VAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGI 99

Query: 87  FIKPVYPEDELHTVVEVTGLKEKKN 111
                     +   +  +  + + +
Sbjct: 100 RPDQALDRKNIREALHDSLKRLQTD 124


>RSc2043 [I] COG2030 Acyl dehydratase
          Length = 346

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 4/131 (3%), Positives = 16/131 (12%), Gaps = 4/131 (3%)

Query: 3   FHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMAVS 62
                                              +D  +              +T   +
Sbjct: 12  EVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGN 71

Query: 63  FKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDEL---HTVVEVTGLKEKKNGTGSVTVW 119
           +     +          +  +          +              LK  +     +   
Sbjct: 72  WLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQV 131

Query: 120 LSTFNQKDEKV 130
                +     
Sbjct: 132 HWP-QRPTNCF 141


>mlr2698 [I] COG2030 Acyl dehydratase
          Length = 346

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 3/138 (2%), Positives = 16/138 (11%), Gaps = 2/138 (1%)

Query: 3   FHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMAVS 62
                   +                 A+ D               +        Q +  +
Sbjct: 8   HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTET 67

Query: 63  FKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELH--TVVEVTGLKEKKNGTGSVTVWL 120
           +           + +   +                       +                 
Sbjct: 68  YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLD 127

Query: 121 STFNQKDEKVFEGELTVL 138
                  ++       + 
Sbjct: 128 LYQVHWPQRPTNCFGKLG 145


>mll6685 [I] COG2030 Acyl dehydratase
          Length = 346

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 7/137 (5%), Positives = 17/137 (12%), Gaps = 8/137 (5%)

Query: 9   GQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGR-FNGIIASGIQTMAVSFKLWV 67
                               A     Y     +                       + +V
Sbjct: 12  EVSTLGLGTMTFGEQNSEADAHAQLDYAVA--QGINLIDVAEMYPVPPRPETQGLTETYV 69

Query: 68  ETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGT--GSVTVWLSTFNQ 125
                         +   K   P    D+     +    K  +         +     + 
Sbjct: 70  GNWLAKHGSREK-LIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128

Query: 126 KDE--KVFEGELTVLVK 140
                          + 
Sbjct: 129 YQVHWPQRPTNCFGKLG 145


>SMc02696 [I] COG2030 Acyl dehydratase
          Length = 346

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 6/141 (4%), Positives = 19/141 (13%), Gaps = 2/141 (1%)

Query: 3   FHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMAVS 62
               ++                    A+   Q  +   +         +     +     
Sbjct: 4   HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63

Query: 63  FKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELH--TVVEVTGLKEKKNGTGSVTVWL 120
                              +   K   P    D+              +        +  
Sbjct: 64  LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123

Query: 121 STFNQKDEKVFEGELTVLVKQ 141
              +       +       K 
Sbjct: 124 DYLDLYQVHWPQRPTNCFGKL 144


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,236,951
Number of extensions: 383529
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 14
Length of query: 141
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 45
Effective length of database: 27,306,367
Effective search space: 1228786515
Effective search space used: 1228786515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)