BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0026.p
         (164 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0832 [K] COG1695 Predicted transcriptional regulators               59   2e-09

>CAC0832 [K] COG1695 Predicted transcriptional regulators
          Length = 240

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 5/141 (3%)

Query: 3   GYEIQQKMISAQTDKWAYVQPASIYHALRKLDKDELVRLEKLEQTGNRSKAIYSITSKGK 62
           GY+IQ+ +     D+WA V+  SIY+AL KL+KD  +   + E+TG R + IY+I+ KG 
Sbjct: 17  GYDIQRFIEIDGMDQWAKVKSGSIYYALNKLEKDGFIFTLREERTGARIRKIYAISDKGV 76

Query: 63  HEFNSMLISSFKKASVVFPSALYTVLTFMDEAPKEEIIGALEVQQQAIQTIYDEMKAGQK 122
            E   +L     K      +  + +    +   ++EII   ++ +Q IQ++    K  + 
Sbjct: 77  EELRRVLKEELLKPIDNVEADKFMIYLMFNRLERDEII---DLTRQHIQSLEQRKKWWED 133

Query: 123 -EKEKYSEVSKNV-LLIFENM 141
             K K SE +  V +L F+N+
Sbjct: 134 GRKIKVSEATLKVEILHFDNV 154


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.128    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,622,726
Number of extensions: 297206
Number of successful extensions: 618
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 66
Effective length of database: 27,075,699
Effective search space: 1786996134
Effective search space used: 1786996134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)