BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0021.p (301 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically selenocy... 79 1e-14 mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ... 79 1e-14 aq_217 [C] COG0243 Anaerobic dehydrogenases, typically selenocys... 79 1e-14 CAC3396 [L] COG2816 NTP pyrophosphohydrolases containing a Zn-fi... 79 1e-14 BMEI1626 [M] COG1215 Glycosyltransferases, probably involved in ... 79 1e-14 >PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing Length = 289 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 7 MVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRISRAALE 66 +++ ++ W++ L SL ++ + GYS ++ + F +TG + YI RR+S++A+ Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 67 LRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRP-----EVFS 121 LR T ILDIAL++ F SQ+ F+RAF K F +P YR++P IRP E Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 Query: 122 PYHYLIKERD 131 P H + D Sbjct: 126 PEHKFVTLED 135 >mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Length = 289 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 7 MVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRISRAALE 66 +++ ++ W++ L SL ++ + GYS ++ + F +TG + YI RR+S++A+ Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 67 LRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRP-----EVFS 121 LR T ILDIAL++ F SQ+ F+RAF K F +P YR++P IRP E Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 Query: 122 PYHYLIKERD 131 P H + D Sbjct: 126 PEHKFVTLED 135 >aq_217 [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing Length = 289 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 7 MVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRISRAALE 66 +++ ++ W++ L SL ++ + GYS ++ + F +TG + YI RR+S++A+ Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 67 LRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRP-----EVFS 121 LR T ILDIAL++ F SQ+ F+RAF K F +P YR++P IRP E Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 Query: 122 PYHYLIKERD 131 P H + D Sbjct: 126 PEHKFVTLED 135 >CAC3396 [L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding Length = 289 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 7 MVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRISRAALE 66 +++ ++ W++ L SL ++ + GYS ++ + F +TG + YI RR+S++A+ Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 67 LRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRP-----EVFS 121 LR T ILDIAL++ F SQ+ F+RAF K F +P YR++P IRP E Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 Query: 122 PYHYLIKERD 131 P H + D Sbjct: 126 PEHKFVTLED 135 >BMEI1626 [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 7 MVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRISRAALE 66 +++ ++ W++ L SL ++ + GYS ++ + F +TG + YI RR+S++A+ Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 67 LRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRP-----EVFS 121 LR T ILDIAL++ F SQ+ F+RAF K F +P YR++P IRP E Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 Query: 122 PYHYLIKERD 131 P H + D Sbjct: 126 PEHKFVTLED 135 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,686,717 Number of extensions: 1090846 Number of successful extensions: 2478 Number of sequences better than 1.0e-05: 755 Number of HSP's gapped: 2487 Number of HSP's successfully gapped: 755 Length of query: 301 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 195 Effective length of database: 26,153,027 Effective search space: 5099840265 Effective search space used: 5099840265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)