BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0007.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 199 5e-51 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 197 2e-50 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 182 5e-46 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 172 7e-43 BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease... 167 2e-41 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 183/303 (60%), Gaps = 10/303 (3%) Query: 2 NDVKTSWMKRQQHL-------GYLFIGPNMIGVILFFIIPAIYSFYLMFTDYKFMSPDTK 54 + KT+ ++Q+ GYLFI P +IG +F + P +YS Y+ FTD+ + + Sbjct: 9 RETKTTKARKQKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYN-EPV 67 Query: 55 FVGLDNIQRM-LGDEVFYIAIKNTLMFLLSVPVSIGLAFIVAVVLNRSVYLKKLLRALYF 113 + G DN R+ + D++F + NT L +P+ + ++ +AV LN+ V L R +F Sbjct: 68 WTGADNYYRLFVTDDLFRKTVFNTFYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFF 127 Query: 114 MPYITSGVAVAFVWMLLFQPNNGPINGILRAIGIANPPGWLSTMESSMYAIDIIWIWFML 173 +P ++S VA+ +W +F + G +N +L +GI + PGWLS + +M A+ I +W L Sbjct: 128 LPAVSSVVAITLLWRWIFNADFGLLNIMLNYVGI-HGPGWLSDEKWAMPAMIIQGVWGGL 186 Query: 174 GYNMIIYLAALQEVSGELLEAAKIDGARTWQTVRSILWPLVSPTTFLLLITGLIMSIKQF 233 G NMI+YLAALQ V+ L EAA IDG WQ I P +SPTTF +LIT I +++ F Sbjct: 187 GINMILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDF 246 Query: 234 GIIQAITQGGPGNSTTVLSLFIYQNAFRYYEMGYASAVSWALFVIIMIFTVVQWLGQKRW 293 +T+GGP STT + +++ NAFRY EMGYASA++W L +II+I T++ + K+W Sbjct: 247 QRFMIMTEGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKW 306 Query: 294 VHY 296 VHY Sbjct: 307 VHY 309 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/291 (40%), Positives = 181/291 (62%), Gaps = 5/291 (1%) Query: 9 MKRQQHLGYL--FIGPNMIGVILFFIIPAIYSFYLMFTDYKFMSPDTKFVGLDNIQRMLG 66 M R++ L +L F+ PN++G ++F IP + S + FTD+ +S F G +N +R+ Sbjct: 4 MTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVS-TIHFTGFENYKRLFN 62 Query: 67 DEVFYIAIKNTLMFLLS-VPVSIGLAFIVAVVLNRSVYLKKLLRALYFMPYITSGVAVAF 125 D F+ + +NT+ F++ +P + L A++LN+ + L+ RA+YF+P ITS VAV+ Sbjct: 63 DPEFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSL 122 Query: 126 VWMLLFQPNNGPINGILRAIGIANPPGWLSTMESSMYAIDIIWIWFMLGYNMIIYLAALQ 185 VW LF P+ G IN L IGIA P WL+ +++M A+ I W +G+ M+++L LQ Sbjct: 123 VWKWLFNPSYGLINYFLSLIGIAGP-NWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQ 181 Query: 186 EVSGELLEAAKIDGARTWQTVRSILWPLVSPTTFLLLITGLIMSIKQFGIIQAITQGGPG 245 +S EAA +DGA + + SI PL++PTTF + I LI S + F + +T+GGP Sbjct: 182 NISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPS 241 Query: 246 NSTTVLSLFIYQNAFRYYEMGYASAVSWALFVIIMIFTVVQWLGQKRWVHY 296 +T L IY +AFRY+EMGYASA+SW LF++I I T++Q QKRW +Y Sbjct: 242 GATMTLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 166/278 (59%), Gaps = 5/278 (1%) Query: 11 RQQHLGYLFIGPNMIGVILFFIIPAIYSFYLMFTDYKFM-SPDTKFVGLDNIQRMLGDEV 69 QQ + YLFI ++ + +F I+P + ++ FTDY + SP+ ++G DN +M D Sbjct: 12 HQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPN--WIGFDNYIKMFRDPY 69 Query: 70 FYIAIKNTLMFL-LSVPVSIGLAFIVAVVLNRSVYLKKLLRALYFMPYITSGVAVAFVWM 128 F I++KNT+++ L VP+ + + A+++N + L R +++P + S VA A +W Sbjct: 70 FLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWY 129 Query: 129 LLFQPNNGPINGILRAIGIANPPGWLSTMESSMYAIDIIWIWFMLGYNMIIYLAALQEVS 188 L P G IN +L GI N P WL +M+AI ++ +W G NM+I+LA LQ + Sbjct: 130 WLLNPQYGLINRVLGWFGI-NGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIP 188 Query: 189 GELLEAAKIDGARTWQTVRSILWPLVSPTTFLLLITGLIMSIKQFGIIQAITQGGPGNST 248 L EA+KI+GA W+T R + WP +S TTFL+ +I + + F +T+GGPGNST Sbjct: 189 ANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNST 248 Query: 249 TVLSLFIYQNAFRYYEMGYASAVSWALFVIIMIFTVVQ 286 L +IY F +MGYASA+S+ LF+II++F+++ Sbjct: 249 ITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIIN 286 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 173/298 (58%), Gaps = 10/298 (3%) Query: 5 KTSWMKRQQHLGYLFIGPNMIGVILFFIIPAIYSFYLMFTDYK-FMSPDTKFVGLDNIQR 63 K+ +++ GY FI P +IG + F +IP S +L FT Y F +P K++GLDN + Sbjct: 11 KSRSIRKDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAP--KWIGLDNFKE 68 Query: 64 ML-GDEVFYIAIKNTLMFLLS-VPVSIGLAFIVAVVLNRSVYLKKLLRALYFMPYITSG- 120 M GDE ++ ++K T ++L+ VP+ +G A +AV+LN + + R L+++P I G Sbjct: 69 MFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGS 128 Query: 121 VAVAFVWMLLFQPNNGPINGILRAIGIANPPGWLSTMESSMYAIDIIWIWFMLGYNMIIY 180 VAVA +W +F N+G IN +L +GI W S+++ + ++ +W G +M+I+ Sbjct: 129 VAVAIMWRNIFG-NDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVW-QFGSSMLIF 186 Query: 181 LAALQEVSGELLEAAKIDGARTWQTVRSILWPLVSPTTFLLLITGLIMSIKQF--GIIQA 238 LA L+ + LEAA +DGA Q I P+++P F L+ I + F I + Sbjct: 187 LAGLKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIIS 246 Query: 239 ITQGGPGNSTTVLSLFIYQNAFRYYEMGYASAVSWALFVIIMIFTVVQWLGQKRWVHY 296 +GGP + T + SL+++Q AF Y++MGYASA++W + VI+ + T++ + WVHY Sbjct: 247 KGEGGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHY 304 >BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease components Length = 270 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 154/271 (56%), Gaps = 3/271 (1%) Query: 28 ILFFIIPAIYSFYLMFTDYKFMSPDTKFVGLDNIQRMLGDEVFYIAIKNTLMFLLSV-PV 86 +L ++P + T+++ +F+GL+N + D F I++KNT ++ V P Sbjct: 1 MLLILLPTAAVIFWSLTNFELGYDGFEFIGLENYAELFSDRTFLISLKNTAVYTAIVAPA 60 Query: 87 SIGLAFIVAVVLNRSVYLKKLLRALYFMPYITSGVAVAFVWMLLFQPNNGPINGILRAIG 146 S+ L VA+++ V K R +YF+P + VA+A VW L P GP+N +L IG Sbjct: 61 SVFLGLGVALLIEGEVRGKSFFRTVYFLPVASLLVAMATVWQYLLHPTLGPVNAMLGMIG 120 Query: 147 IANPPGWLSTMESSMYAIDIIWIWFMLGYNMIIYLAALQEVSGELLEAAKIDGAR-TWQT 205 IA P WL + E+ ++++ +I IW +G+NM+++LA L + EL AA++DG + +W+ Sbjct: 121 IAGP-NWLGSSETVLFSLALIGIWQSVGFNMVLFLAGLTAIPRELYSAAEVDGVKNSWER 179 Query: 206 VRSILWPLVSPTTFLLLITGLIMSIKQFGIIQAITQGGPGNSTTVLSLFIYQNAFRYYEM 265 R + WPL+ TT + +I ++K F ++ +T+GGP ++ VL IYQ F Y + Sbjct: 180 FRLVTWPLLGATTLFVTTISIINAVKVFETVKTLTEGGPNKASEVLLWTIYQEGFVYLRV 239 Query: 266 GYASAVSWALFVIIMIFTVVQWLGQKRWVHY 296 GYASA++ +++I ++Q+ R HY Sbjct: 240 GYASAMTVIFLAVLVILMLLQFRVLDRRTHY 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,176,143 Number of extensions: 858500 Number of successful extensions: 3248 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 2987 Number of HSP's successfully gapped: 197 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)