BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0041.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PAB0724 [GEPR] COG0477 Permeases of the major facilitator superf...    50   1e-06
PAB0754 [GEPR] COG0477 Permeases of the major facilitator superf...    49   2e-06

>PAB0724 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 418

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 12  TSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASGAIAPAGMILY 71
            SA+  LL+L   +G+    IN+P+   LQ+ V  E RGRVF+ +E  +    P  +++ 
Sbjct: 305 NSAFMLLLVLGATMGMAGAMINVPLASKLQRAVPSEIRGRVFSTMEMLARIANPLSLVVV 364

Query: 72  GMLLDRV----PSGFLLLASGVAIVLVALLGRRGLKNGRALEVMQNRDPLP 118
           G L+D +     + FL L SGV I+   +   + L +    ++++N   +P
Sbjct: 365 GPLVDTIGAWKTASFLWLGSGVVILYYWIFKGKELTSEEESKLVENFPGVP 415


>PAB0754 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 398

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 15  YFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASGAIAPAGMILYGML 74
           Y  +L   F +G   + +NIPI   LQ  V  EYR R F+ +ET S    P GMI+ G  
Sbjct: 305 YLVILTSAFAIGFFNVLVNIPIMTKLQTIVPREYRARFFSTLETLSMGATPLGMIIVGPT 364

Query: 75  LDRVPSGFLLLASGVAIVLVALLGRRGLKNGRALEV 110
           +D++  G+  ++  + IV +A+     L+  R L++
Sbjct: 365 IDKL--GYFSVSITLTIVGIAISVYYWLRYSRILKL 398


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.329    0.143    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,199,413
Number of extensions: 284194
Number of successful extensions: 1248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)