BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0033.p (159 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value aq_1322 [C] COG1007 NADH:ubiquinone oxidoreductase subunit 2 (ch... 163 1e-40 aq_1320 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (c... 163 1e-40 aq_1321 [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (ch... 163 1e-40 STM1825 [LR] COG0494 NTP pyrophosphohydrolases including oxidati... 162 2e-40 CC0888 [H] COG0054 Riboflavin synthase beta-chain 108 2e-24 >aq_1322 [C] COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) Length = 346 Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 8/150 (5%), Positives = 26/150 (17%) Query: 9 EGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIAQ 68 S + + S+ + A + + P Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 69 KMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQA 128 G + A + ++ N L + + ++ Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 129 IERSGTKAGNKGWDAAASAIEMANLNKLFK 158 + + + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPA 154 >aq_1320 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 8/150 (5%), Positives = 26/150 (17%) Query: 9 EGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIAQ 68 S + + S+ + A + + P Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 69 KMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQA 128 G + A + ++ N L + + ++ Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 129 IERSGTKAGNKGWDAAASAIEMANLNKLFK 158 + + + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPA 154 >aq_1321 [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) Length = 346 Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 8/150 (5%), Positives = 26/150 (17%) Query: 9 EGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIAQ 68 S + + S+ + A + + P Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 69 KMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQA 128 G + A + ++ N L + + ++ Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 129 IERSGTKAGNKGWDAAASAIEMANLNKLFK 158 + + + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPA 154 >STM1825 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes Length = 673 Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 16/152 (10%), Positives = 31/152 (20%) Query: 8 LEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIA 67 G + G + + A G +A V + Sbjct: 4 NPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 68 QKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQ 127 ++ + T D + E A N T + E E Sbjct: 64 KERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEG 123 Query: 128 AIERSGTKAGNKGWDAAASAIEMANLNKLFKK 159 IE + ++ ++ Sbjct: 124 LIEDDKVLLQQLISTISNWKNDLKTPSQAAAS 155 >CC0888 [H] COG0054 Riboflavin synthase beta-chain Length = 153 Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 77/131 (58%) Query: 18 RYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIAQKMAESGRYD 77 R +VV +FN +T LL GALD G D+ PG +E+PLIAQ +A +GRY Sbjct: 8 RIAIVVSQFNPEVTDGLLKGALDHLAAQGAPVAAPDIIAAPGAYELPLIAQTLARTGRYA 67 Query: 78 AVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQAIERSGTKAG 137 V+ LG VI+G T H++++ + G+ A L+T P FGV+TT EQA+ RS A Sbjct: 68 GVVCLGCVIKGETAHFEFISLGASLGLMAAGLQTETPVSFGVLTTYTDEQAVARSRDDAE 127 Query: 138 NKGWDAAASAI 148 NKG +AA + + Sbjct: 128 NKGREAANACL 138 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,857,484 Number of extensions: 490591 Number of successful extensions: 1398 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 1396 Number of HSP's successfully gapped: 13 Length of query: 159 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 61 Effective length of database: 27,075,699 Effective search space: 1651617639 Effective search space used: 1651617639 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)