BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0030.p (152 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1087 [K] COG1386 Predicted transcriptional regulator containi... 88 6e-18 mlr9362 [K] COG1386 Predicted transcriptional regulator containi... 62 4e-10 mll9345 [K] COG1386 Predicted transcriptional regulator containi... 61 6e-10 mll9646 [K] COG1386 Predicted transcriptional regulator containi... 56 2e-08 mlr6199 [K] COG1386 Predicted transcriptional regulator containi... 54 9e-08 >mll1087 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Length = 254 Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 3/118 (2%) Query: 1 VSHERGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRV 60 V RG+ +V++ + T D A R + + LS+AALE LAI+AY QP+TR Sbjct: 83 VYSRRGVNLVRVGDAWAFRTAGDLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRA 140 Query: 61 EIEEIRGVKSERA-IHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 EIE+IRGV++ + + TL + ++ GR + GRP+ YGTT++FL+ F L ++++LP Sbjct: 141 EIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLP 198 >mlr9362 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Length = 229 Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRA-SLSQAALETLAIVAYRQPITRVEIE 63 R +V +AG ++ T P +A A RA LSQ+ + L +AY QPITR E+ Sbjct: 84 RPYDLVAVAGGWKHLTRPAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELS 143 Query: 64 EIRGVKSERA-IHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPE 118 G + R I L LI R+ G P Y TTK FL FGL L++LP+ Sbjct: 144 SFFGKEISRDFIGHLRGAGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 199 >mll9345 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Length = 233 Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRA-SLSQAALETLAIVAYRQPITRVEIE 63 R +V +AG +R T P +A S RA L+Q+ + L +A+ QPITR E+ Sbjct: 82 RPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELS 141 Query: 64 EIRGVKSER-AIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPE 118 G + R I L + LI R+ G P Y TTK+FL FGL L++LP+ Sbjct: 142 SFFGKEISRDLIGNLRSFGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 197 >mll9646 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Length = 225 Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRAS--LSQAALETLAIVAYRQPITRVEI 62 R ++V +AG ++ T + +A+ LSQ+ L +AY QPITR E+ Sbjct: 77 RPYELVSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGEL 136 Query: 63 EEIRGVKSER-AIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPEPSN 121 G + R I L ++LI R+ G P Y TTK+FL FGL L++LP + Sbjct: 137 SAFFGKEVSRDLIGVLRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLP---D 193 Query: 122 FDASTD-DLEEETQLLFSKLDSQMT 145 F+A D L + +LL + S++ Sbjct: 194 FEALEDAGLLSKEKLLAGDIMSELV 218 >mlr6199 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Length = 240 Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 11/129 (8%) Query: 5 RGLQVVQIAGNYRLAT---LPD--HAPYFERLAYSPSRASLSQAALETLAIVAYRQPITR 59 R ++V +AG ++ T D HA + ++ A LSQ+ L +AY QPITR Sbjct: 77 RPYELVSVAGGWQHRTKKVFGDVIHAAFGQQGA--DGSKELSQSEALVLMCIAYFQPITR 134 Query: 60 VEIEEIRGVKSER-AIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPE 118 E+ G + R I L ++LI R+ G P Y TTK+FL FGL L++LP Sbjct: 135 GELSSFFGKEVSRDLIGVLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLP- 193 Query: 119 PSNFDASTD 127 +F+A D Sbjct: 194 --DFEALED 200 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.131 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,379,536 Number of extensions: 361394 Number of successful extensions: 1997 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 1993 Number of HSP's successfully gapped: 6 Length of query: 152 Length of database: 38,378,431 Length adjustment: 97 Effective length of query: 55 Effective length of database: 27,191,033 Effective search space: 1495506815 Effective search space used: 1495506815 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 111 (47.4 bits)