BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0018.p (420 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1579 [O] COG0755 ABC-type transport system involved in cytochr... 368 e-101 BS_resC [O] COG0755 ABC-type transport system involved in cytoch... 308 1e-83 aq_2043 [O] COG0755 ABC-type transport system involved in cytoch... 119 7e-27 >BH1579 [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component Length = 399 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/412 (45%), Positives = 267/412 (64%), Gaps = 20/412 (4%) Query: 7 SSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLICHLAYFI 66 SS+ + AFFLY + + + ++IMG+KW ++ E RWG + + + L+ L YFI Sbjct: 6 SSNFLLVAFFLYLAATIFYAVSIMGKKWRNKEGEMKGNRWGTFGYYSAIIALLFALGYFI 65 Query: 67 TRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMAYAAVFP 126 TRW +G PVSNM+E++TF + + +AF +I +IYR ILG+F +P ++++AYA+VFP Sbjct: 66 TRWMVAGFAPVSNMFEYVTFFGICIGLAFVIINAIYRSNILGLFTMPTVMLMIAYASVFP 125 Query: 127 QEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDRKQQRLV 186 EV PLIP+L+S +L +HVT ALG+ AV FA+GL+YL+RT++++ + + + Sbjct: 126 SEVAPLIPALQSNWLALHVTTVALGQGILAVSFASGLVYLIRTIDYSIQSW----KTFWL 181 Query: 187 EFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMPPIVAPY 246 EF L+S+I ++GF+ + F+ YE F N ++T+E Y +PPIV P+ Sbjct: 182 EFILYSVITVVGFILITYTFQAMNYEAKFNYVN-----ENDVEATME---YHLPPIVGPH 233 Query: 247 HSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAVRKPLGR 306 ++ S +PL P+W+ + NTV RKP+G Sbjct: 234 EGQLISETG----NQPLVNMPAWIKS----DQLNTVIWSFLVGLVLYLLLYLVFRKPVGA 285 Query: 307 AIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPKEVWALV 366 + P++ + +DEI+YRAIAIGFP+FTLG LIFAMIWAQ+AW RFWGWDPKEVWAL+ Sbjct: 286 ILQPIVKRVSPQLVDEISYRAIAIGFPVFTLGGLIFAMIWAQIAWTRFWGWDPKEVWALI 345 Query: 367 TWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAG 418 T+LFY+AYLHLRL++GW G +SAWL V+GF ++MF LV VNLVIAGLHSYAG Sbjct: 346 TFLFYAAYLHLRLSKGWHGERSAWLCVIGFAIIMFNLVFVNLVIAGLHSYAG 397 >BS_resC [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component Length = 352 Score = 308 bits (789), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 160/348 (45%), Positives = 232/348 (66%), Gaps = 24/348 (6%) Query: 72 SGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMAYAAVFPQEVQP 131 +GH PVSNM+EF T MM+++AF +++ +YR LG+F + I+++++AYA++FP ++ P Sbjct: 27 NGHAPVSNMFEFTTAFGMMLVLAFIILYFLYRLPSLGLFTLSIALLLIAYASMFPTDISP 86 Query: 132 LIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDRKQQRLVEFTLF 191 LIPSL+S +L IHVT AALG++ A+ F AG+++LL+ V+ + K+ +E +F Sbjct: 87 LIPSLQSNWLYIHVTTAALGQAILAISFVAGVIFLLKHVD----QTKPSKKTFWLEAIMF 142 Query: 192 SIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEK--VSYKMPPIVAPYHSE 249 ++ + F+ AFR AGYE F D + EK + Y+MP +V P+ E Sbjct: 143 ILVTTVAFIAITSAFRLAGYEAEF----------NWVDKSKEKSVMVYEMPALVGPHQGE 192 Query: 250 IESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAVRKPLGRAIH 309 + + G +PL + P+ + +GRK NTV +RK + +H Sbjct: 193 LLT----EGRMEPLVDLPA----LFSGRKVNTVIWSFGAGLVLYGALRLIIRKRISALLH 244 Query: 310 PVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPKEVWALVTWL 369 P++ ++ + +DE+ YRA++IGFPIFTLGALIFAMIWAQ+AW RFWGWDPKEVWAL+T+L Sbjct: 245 PLVKNVNLDLVDEVGYRAVSIGFPIFTLGALIFAMIWAQLAWTRFWGWDPKEVWALITFL 304 Query: 370 FYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYA 417 FY+AYLHLRL+RGW G KSAWLAV+GF ++MF L+ VNLV+AGLHSYA Sbjct: 305 FYAAYLHLRLSRGWHGEKSAWLAVIGFAIIMFNLIFVNLVLAGLHSYA 352 >aq_2043 [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component Length = 293 Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 0/98 (0%), Positives = 0/98 (0%), Gaps = 1/98 (1%) Query: 320 LDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPKEVWALVTWLFYSAYLHLRL 379 + A + + + + + + + L Sbjct: 214 EELSAEAAGGFAISHIV-DCTMVLAKELIMTKYQAQIYKKEIGDIVRLFRIDGCRLCGHD 272 Query: 380 ARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYA 417 Sbjct: 273 310 Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 10/130 (7%), Positives = 32/130 (24%), Gaps = 4/130 (3%) Query: 71 GSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMAYAAVFPQ-EV 129 + + F++M + T + + KI + + + + Sbjct: 97 RGEPVAFITVESPAPFVTMGLRERATAMGVDFDKIKDKIILIDAASHATLRENIPNLLAT 156 Query: 130 QPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKE--KNDRKQQRLVE 187 + + I ++ L E+ + + +K+ E Sbjct: 157 LAHVIKTYKVKHTIIDSVTGLYEAKEMLARTIVRQLFNFM-KKWYQTALFVSQKRSSHEE 215 Query: 188 FTLFSIIVII 197 + + Sbjct: 216 LSAEAAGGFA 225 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,908,115 Number of extensions: 1181427 Number of successful extensions: 4143 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 4133 Number of HSP's successfully gapped: 13 Length of query: 420 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 311 Effective length of database: 25,807,025 Effective search space: 8025984775 Effective search space used: 8025984775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 117 (49.7 bits)