BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0014.p (330 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0814 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 248 1e-65 RSc1050 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 94 4e-19 BS_yhfB [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 90 6e-18 XF1817 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 87 5e-17 VCA0751 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 85 1e-16 >CAC0814 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 334 Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 2/317 (0%) Query: 6 IKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSLTMAFEAAS 65 IKDI YHP +GND+FI+HFD++GIDIRGLL + GR+ RY D E LTM +AA Sbjct: 8 IKDIAYYHPDNLVGNDYFIEHFDKQGIDIRGLLKSSGRKYRYISDDENETILTMGIKAAE 67 Query: 66 NVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGMTASV 125 +++K+ + I+ I +++ TPEYI PTN++ +H I S + D NANCAGM ++ Sbjct: 68 KLIEKSDIDPQKINSIIFSTSTPEYISPTNAIKLHESIRAGSKSTVYDLNANCAGMLVAI 127 Query: 126 EQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHS-VGFID 184 +Q SR M +NP I+ +L++GSD + ++ ++ + YANFGD+A A+ILE ++ GFID Sbjct: 128 DQASRAMRSNPDIKYSLIVGSDQLNRYSRFDEAITYANFGDSACAIILENTYNTDNGFID 187 Query: 185 SIYQTDTCVYGNSMFPAEGLANLGRNG-VAAGEFNVKFIPFDDSICVDAASESINTLLSN 243 S T++ + + PA+GL++ N ++ + V + FD++ +A SI TLL Sbjct: 188 SDSYTNSSTHDKIVLPAKGLSSTIHNKHLSVKDKLVHWTRFDNTGTFFSAKISIETLLKK 247 Query: 244 NGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRAVTT 303 N + IK SQ ++ +I+ + + ++ V+IGD++GYT T+SP +A + + Sbjct: 248 NNLKKSDIKKYFLSQFAVQSIQYICAQLNEDENKFVFIGDKYGYTGTTSPLLAFAKTIEN 307 Query: 304 GKIERGDKVLFWTVGAG 320 ++ +GD V+FWTVGAG Sbjct: 308 NELNKGDYVIFWTVGAG 324 >RSc1050 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 326 Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 23/335 (6%) Query: 5 RIKDIDIYHPSKKIGNDFFIQHFDEKGIDI--RGLLAALGRESRYSIDSSEENSLTMAFE 62 RI Y P K++ N E+GI+ ++ G +R+ + S +A + Sbjct: 6 RIIGTGSYLPPKRVTNHELAAQLAEQGIETSDEWIVTRSGIRARHYAEPDVTCS-DLAAK 64 Query: 63 AASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGMT 122 AA ++ G+ A+IDLI A+ TP+++FP+ + ++ + +G +H D A C+G Sbjct: 65 AAERAIEAAGIDRAEIDLILVATSTPDFVFPSAACLVQQKLGLSNHCAAFDLQAVCSGFV 124 Query: 123 ASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSVGF 182 + + + A R ALVIG++ + D ND FGD A A++L+ + G Sbjct: 125 YGLATADKFIRAGG-YRNALVIGAEVFSRILDFNDRTTCVLFGDGAGAVVLQASDEP-GI 182 Query: 183 IDSIYQTD------TCVYGNSMFPA-EGLANLGRNGVAAGEFNVKFIPFDDSICVDAASE 235 + + D CV GN A +G A L +G A + V + D + +A Sbjct: 183 LSTALHADGSHADILCVPGNVAGGAIKGSAFLYMDGQAVFKLAVNVL---DKVAREA--- 236 Query: 236 SINTLLSNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFV 295 L+ ++ I Q ++ ++ + K G+ + V DE G TS +S + Sbjct: 237 -----LALAEVESSQIDWLIPHQANIRIMQGTAKKLGLPGERMVVTVDEHGNTSAASIPL 291 Query: 296 ALHRAVTTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 AL AV G+I++G VL VG G+ A ++ + Sbjct: 292 ALDAAVRDGRIQKGHHVLLEGVGGGFTWGAALLRF 326 >BS_yhfB [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 211 Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 0/347 (0%), Positives = 0/347 (0%), Gaps = 41/347 (11%) Query: 1 MAGIRIKDIDIYHPSKKIGN---DFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSL 57 M + +I F F+ + + + S + Sbjct: 1 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSA-----QATDVS----VNKAT 51 Query: 58 T--MAFEAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSN 115 + + G+ G + + + I + Sbjct: 52 AKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVP-EDRAA 110 Query: 116 ANCAGMTASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILER 175 + + V + + P + ++ Sbjct: 111 LEALPGVGRK-TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPA 169 Query: 176 DEHSVGFIDSIYQTDTCVYGNSMFPAEGLAN------------LGRNGVAAGEFNVKFIP 223 + I + P G Sbjct: 170 EFKVDCHHWLILHGRY--TCIARKPRCGSCIIEDLCEYKEKVD 227 Query: 224 FDDSICVDAASESINTLLSNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGD 283 Sbjct: 228 ----------- 276 Query: 284 EFGYTSTSSPFVALHRAVTTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 Sbjct: 277 323 >XF1817 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 324 Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 15/329 (4%) Query: 5 RIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSLTMAFEAA 64 RI Y P K + ND D IR G R+ I + E + +A+EAA Sbjct: 8 RIAGTGGYLPEKVLTNDDLAHIVDTSDEWIR---TRTGIRERH-IAAEGETTSDLAYEAA 63 Query: 65 SNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGMTAS 124 L+ + AD+DLI + TP+ IFP+ + ++ +G D NA C+G + Sbjct: 64 ICALEAAEVRSADLDLIVVGTTTPDLIFPSTACLLQARLGAVGCG-AFDVNAACSGFVYA 122 Query: 125 VEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSVGFID 184 + V+ + +++ + LV+G+D + D +D FGD A A++L+ DE + G + Sbjct: 123 L-SVAEKFVSSGCSKTVLVVGADTLTRIIDWSDRTTCVLFGDGAGAVVLKADEDT-GILS 180 Query: 185 SIYQTDTC---VYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTLL 241 + D + + + + G G + N F V A ++ L Sbjct: 181 THLHADGSKKELLWDPVGVSVGFGEGKDCGALLMKGNEVF-----KYAVKALDRVVDETL 235 Query: 242 SNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRAV 301 N +D + Q +L I A + + + D V D G TST+S +AL A+ Sbjct: 236 EANHLDKHELDWLIPHQANLRIIEATARRLDMSMDQVVVTVDRHGNTSTASVPLALDEAI 295 Query: 302 TTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 +G+++RG +L G G+ + ++ Y Sbjct: 296 RSGRVQRGQLLLLEAFGGGFTWGSALLRY 324 >VCA0751 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 403 Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 132/284 (46%), Gaps = 13/284 (4%) Query: 44 ESRYSIDS---SEENSLTMAFEAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIH 100 +SR I+ S N+ +A AA + + G++ +IDLI A+ +P+ + P + + Sbjct: 78 QSRTGIEQRRISHVNTSDLATVAAQHAIACAGVSVEEIDLIIVATCSPDSLIPNIASRVQ 137 Query: 101 RLIGGPSHAICIDSNANCAGMTASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVY 160 + +G PS A D NA C G +E +R M A+ R ALVIG++ ++ + D Sbjct: 138 QNLGIPS-AAAFDLNAACTGFLYGLETATRLMQAS-HYRHALVIGAERLSFYLDWTKRDT 195 Query: 161 YANFGDAAAALILERDEHSVGFIDSIYQTDTCVYGNSMFPAEGLANLGR----NGVAAGE 216 FGD A A++L + E VG D+ D P G A + R NG A + Sbjct: 196 AVLFGDGAGAVVLSKTEQKVGLQDAQIGCDAQGRDILAVPKFGTA-MDRFDADNGYWAFD 254 Query: 217 FNVKFIPFDDSICVDAASESINTLLSNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDD 276 F K I + AA++ + L+ +G+ E I Q ++ I+ + GI D Sbjct: 255 FVGKEIFKRAVRGMGAAAQQV---LARSGLSTEEIDVVIPHQANIRIIQTLCDLAGIAQD 311 Query: 277 VAVYIGDEFGYTSTSSPFVALHRAVTTGKIERGDKVLFWTVGAG 320 A +G TS ++ +AL A+ GKI+ D +L GAG Sbjct: 312 KAFVNIHRYGNTSAATVPIALCEALEQGKIKPHDDLLVAAFGAG 355 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,307,768 Number of extensions: 1013222 Number of successful extensions: 1826 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 1797 Number of HSP's successfully gapped: 31 Length of query: 330 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 223 Effective length of database: 26,037,693 Effective search space: 5806405539 Effective search space used: 5806405539 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)