BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0002.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ypbG [R] COG1408 Predicted phosphohydrolases 93 5e-19 BS_ykuE [R] COG1408 Predicted phosphohydrolases 74 4e-13 L42411 [R] COG1408 Predicted phosphohydrolases 65 9e-11 lin0757 [R] COG1408 Predicted phosphohydrolases 63 5e-10 CAC2775 [R] COG1408 Predicted phosphohydrolases 60 4e-09 >BS_ypbG [R] COG1408 Predicted phosphohydrolases Length = 259 Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 115/268 (42%), Gaps = 22/268 (8%) Query: 9 IAGICVXXXXXXXXXXXAAAFRNHIIAEEIFLEALPKEFDGFRILFISDIHRRRLPFRRL 68 IAG+ A A NH+ L + K I FISDIH+R + L Sbjct: 7 IAGVLTVAAAAMTAKMYATAKGNHLKTHTFPLSKM-KGKPPLTIFFISDIHKRLIDQDLL 65 Query: 69 SPMKGEI-DAVFLGGDLTEKGASMNRLYDNMTXXXXXXX-XXXVHGNHDYRANITLVDNI 126 + V +GGDL E G R+ +N+ V GN+DY + +I Sbjct: 66 EKARSHAPHLVIIGGDLAEGGVPSARIEENIKRLVHFGVPIVFVWGNNDYEVRQHKLYSI 125 Query: 127 IRGSGVKLLQDESITIQKNGSSLLLTGVDFPRTGGKRAYRPLPPLSSAEAPFCRIILVHD 186 + GV L++ES+ NG ++ + GVD R + L ++ I++ H+ Sbjct: 126 FKAHGVITLRNESVPFSYNGHTIAIAGVDDIRMEMDHYEEAIKELDESQ---LNILVCHN 182 Query: 187 PLWLTQQSEVPA-DLVLAGHTHGGQVVLPFVGHRHVDPFYRQYNAGHYVIPRNDGSGKKA 245 P Q +E D++L+GHTHGGQ+ G Y G I +N A Sbjct: 183 PEIHEQINEDDGIDVILSGHTHGGQIRFGKFG---------PYELGKTGIVKN------A 227 Query: 246 GLLISRGFGTAHFPLRWGSRAEMHVLTL 273 LIS G+GT PLR G+ E H++TL Sbjct: 228 AYLISNGYGTTKVPLRLGAEPETHIVTL 255 >BS_ykuE [R] COG1408 Predicted phosphohydrolases Length = 287 Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%) Query: 43 LPKEFDGFRILFISDIHR------RRLPFRRLSPMKGEIDAVFLGGDLTEKGASMNR--- 93 +P FDGF+I+ SD H L L+ + + D + GD+ + + Sbjct: 51 IPHGFDGFKIVQFSDAHLSDYFTLEDLKTVILTINESKPDLIVFTGDIIDNPDTYQHHQA 110 Query: 94 LYDNMTXXXXXXXXXXVHGNHDYRANITLV-DNIIRGSGVKLLQDESITIQ-KNGSSLLL 151 + + ++GNHD+ T V +++ G + ++ T+ +GS + + Sbjct: 111 VIPLLRKLNAPFGKLCIYGNHDHGGYGTAVYKSLMTAGGFTVYRNGYQTLSLADGSKIEI 170 Query: 152 TGVDFPRTGGKRAYRPLPPLSSAEAPFCRIILVHDPLWLTQQSEVPADLVLAGHTHGGQV 211 +D G R + LS I+LVH+P + ++ P +L L+GHTHGGQ+ Sbjct: 171 ASLDDFNAGKPRFMQGT--LSRLSDRLFSILLVHEPDAALKTTDYPVNLQLSGHTHGGQI 228 Query: 212 VLPFVGHRHVDPFYRQYNAGHYVIPRNDGSGKKAGLLISRGFGTAHFPLRWGSRAEMHVL 271 LPF G P+ + Y G Y GS + ++RG G PLR+ ++ E+ V Sbjct: 229 QLPFYGPIITPPYGKVYTEGMY----QTGS---THIYVNRGLGMTRLPLRFLAKPEITVF 281 Query: 272 TLRRA 276 TL+ Sbjct: 282 TLKST 286 >L42411 [R] COG1408 Predicted phosphohydrolases Length = 278 Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%) Query: 48 DGFRILFISDIH-RRRLPFRRLSPMKGEI-----DAVFLGGDLTEKGASMNR---LYDNM 98 + +I+ +SD+H ++ RL + + D + GDL + + N + + Sbjct: 47 ENLKIVQLSDLHIKKDFNADRLDKVIQKTNEQNPDFIIFSGDLYDNYSQYNENEAVISKL 106 Query: 99 TXXXXXXXXXXVHGNHDYRAN-ITLVDNIIRGSGVKLLQDES-ITIQKNGSSLLLTGVDF 156 + GN DY + NI+ S LL++E+ + NG +L TG+D Sbjct: 107 KSLKAKYGKIAIWGNRDYGGGAVKEYANIMAESDFSLLRNENQVFTLDNGKKILFTGLDD 166 Query: 157 PRTGGKRAYRPLP-PLSSAEAPFCRIILVHDPLWLTQQSEVPADLVLAGHTHGGQVVLPF 215 G + P P AE + I+L H+P ++Q +L+L+GH+HGGQ+ +P Sbjct: 167 ALLGNPQ----FPSPNQMAETSY-DILLTHEPDEVSQYQNKGYELILSGHSHGGQINVPL 221 Query: 216 VGHRH-----VDPFYRQYNAGHYVIPRNDGSGKKAGLLISRGFGTAHFPLRWGSRAEMHV 270 + + Y G Y + G L ++ G GT H R+G E+ V Sbjct: 222 IPQIQKKATALMSHANNYTGGLYQL------GANEKLYVNTGIGTTHLSARFGVAPEIAV 275 Query: 271 LTL 273 LT Sbjct: 276 LTF 278 >lin0757 [R] COG1408 Predicted phosphohydrolases Length = 293 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 100/243 (41%), Gaps = 32/243 (13%) Query: 37 EIFLEALPKEFDGFRILFISDIHRRRLPFRR--LSPMKGEI--DAVFLGGDLTEKGASMN 92 EI + +P E+DG + +SD+H L + E+ DAVFL GD+ + S Sbjct: 32 EILSDKIPAEWDGATFVQLSDLHSASFGLYNNPLLSIVNELAPDAVFLTGDMIDGDESPF 91 Query: 93 RLYDNMTXXXXXXXXXXVHGNHDYR-ANITLVDNIIRGSGVKLLQDESITIQKNGSSLLL 151 + V GNH+ R A + V +L++E ++K+G+++++ Sbjct: 92 VTMAVVRKLAKEFPVFYVSGNHEGRSAFYEDFKADMEKHHVAVLENERYFLRKDGAAIMV 151 Query: 152 TGVDFPR-TGGKRAYRPLP-----------PLSSAEA----PFCRIILVHDPLWLTQQSE 195 GV PR A + LP L A A + I+L H P + Sbjct: 152 AGVKDPRFVRDDWAEKELPKQVWEEEALKEALDEATANLSPDYFTILLAHRPEFWPLYQA 211 Query: 196 VPADLVLAGHTHGGQVVLPFVGHRHVDPFYRQYNAGHYVIPRNDGSGKKAG---LLISRG 252 P DLVL+GH HGGQ LP + G +P+ AG L++SRG Sbjct: 212 YPVDLVLSGHAHGGQFRLPLTEGL--------FAPGQGFMPKWTAGLHSAGGKSLIVSRG 263 Query: 253 FGT 255 G Sbjct: 264 LGN 266 >CAC2775 [R] COG1408 Predicted phosphohydrolases Length = 287 Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 37/261 (14%) Query: 41 EALPKEFDGFRILFISDIHRRRLPFRRLSPMKGEI-----DAVFLGGDLTEKGASMNRLY 95 + LPKEFDGF+I+ ++D+H + ++ S + I + + + GD+ + + Sbjct: 35 KKLPKEFDGFKIVQLADLHSKEFG-KKNSKLIKRIKIINPNVIMVTGDMINDDENYDVCI 93 Query: 96 DNMTXXXXXXXXXXVHGNHDYRANITLVDNIIRGSGVKLLQDESITIQKNGSSLLLTGVD 155 + + + GNH+ N+ L++ + + L + + +NG +L Sbjct: 94 NLLEKLSLEYKVYFIVGNHE--QNLQLINPHKYNNMMADLMKIKVDVIQNGKREILYKNK 151 Query: 156 ----FPRTGGKRAYRPLPPLSSAEAPF----------------CRIILVHDPLWLTQQSE 195 + T R YR + S F I+++H+P++ Sbjct: 152 KINLYGSTMKLRYYRNMMKKESKNIEFRLEDLEESVGKSDENAYNILMIHNPIFFNVYDL 211 Query: 196 VPADLVLAGHTHGGQVVLPFVG--HRHVDPFYRQYNAGHYVIPRNDGSGKKAGLLISRGF 253 ADLVL GH HGG + LP +G F+ +Y +G + +++SRG Sbjct: 212 WKADLVLCGHMHGGMIKLPLIGGVFSPEHTFFPKYCSGRF-------QQNNTNMIVSRGL 264 Query: 254 GTAHFPLRWGSRAEMHVLTLR 274 G F R +R E+ V+TL+ Sbjct: 265 GRGGFGFRLFNRPELTVITLK 285 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,007,782 Number of extensions: 760050 Number of successful extensions: 3110 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 3102 Number of HSP's successfully gapped: 11 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)