BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0009.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all2672 [V] COG1131 ABC-type multidrug transport system, ATPase ... 219 4e-57 sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase ... 171 1e-42 BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase c... 165 8e-41 alr1619 [V] COG1131 ABC-type multidrug transport system, ATPase ... 164 2e-40 CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase ... 147 2e-35 >all2672 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/281 (41%), Positives = 169/281 (60%), Gaps = 5/281 (1%) Query: 3 LQIEQVSKSY-GAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 L I+Q++K Y AL I+LK+ G+ GLLGPNGAGKS+LMR LAT++ G I + Sbjct: 2 LIIKQLNKKYPNGIQALRDISLKIDYGIFGLLGPNGAGKSSLMRTLATLQDADSGSIELD 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 GV+ PQ R LGYLPQDFGVYP+++ + L+ +A KG R Sbjct: 62 GVNFLKNPQSARSILGYLPQDFGVYPSVSAEDLLDQLAVFKGFIHHQQRREIVAQQLQLV 121 Query: 122 XAND-RKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 + R++ +G FSGGMRQR GIAQ+LL P L+IVDEPT GLDP ERI F NLLS +S Sbjct: 122 NLYEQRQQKLGTFSGGMRQRFGIAQALLGSPKLVIVDEPTAGLDPAERIRFHNLLSEISQ 181 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DR+++LSTHIV D+ + P +A+M +G +++ +P+ LI ++ +VW + S ++ Sbjct: 182 DRVLLLSTHIVEDVAELCPNMAIMNRGEILRSGSPQALINALNGRVWTALHSETS--NVE 239 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYL 281 ++S + R + R++SD +P + + L D Y Sbjct: 240 ELTVITSRMSRGER-WVRVLSDSQPGKDFQPVEPDLNDVYF 279 >sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 342 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 134/218 (61%), Gaps = 1/218 (0%) Query: 3 LQIEQVSKSYGAKHALSGITLKLKPG-VTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 +++E +SK YG+ A+ + ++ G + G LGPNGAGK+T MR+LA T G + Sbjct: 2 IEVEHLSKVYGSTTAIQNVDFSVQKGEILGFLGPNGAGKTTTMRILAGYIPATTGTVRVA 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 G D+ Q +RK +GYLP++ +Y ++T FL ++A++KG+ R R Sbjct: 62 GFDVHEQSLAVRKRIGYLPENPPLYGDMTVASFLNFVASIKGVKPGDRRQRVIWAMERCQ 121 Query: 122 XANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSGD 181 RK L+ S G +QRVGIAQ++++DP+++I+DEPTVGLDP + I RNL+ SL+ D Sbjct: 122 LTEKRKVLIRKLSKGFKQRVGIAQAIVHDPAVIILDEPTVGLDPKQIIEVRNLIKSLAED 181 Query: 182 RIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLI 219 IILSTHI+ ++ + ++ +GR+V P+NL+ Sbjct: 182 HTIILSTHILPEVSMTCDRVTIINQGRVVATNTPDNLL 219 >BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 309 Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 3 LQIEQVSKSYGAKHALSGITLKLKPG-VTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 + +E+V+K YG AL ++ K++ G V G+LGPNGAGKSTL+++L + P++G + Sbjct: 2 INVEKVTKMYGPFTALFNVSFKVEEGEVLGILGPNGAGKSTLIKILTSFHYPSKGNVKIF 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 G DI + + +++GY+P+ +YP L+ E+L++I+ +KG+ Sbjct: 62 GKDIVEHSKEILQQIGYVPEKLALYPELSVKEYLKFISEIKGVKKLKKEIDRVISIFKLK 121 Query: 122 XANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSGD 181 D+ L+ S G RQRVGIA +L+N+P L+I+DEPT GLDP + I F+ L L+ + Sbjct: 122 EVEDK--LISQLSKGFRQRVGIAGALINNPKLVILDEPTNGLDPNQIIEFKEFLRELAKE 179 Query: 182 RIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQS 221 I+ S+HI++++ESI I ++ G +V EN+I++ Sbjct: 180 STILFSSHILSEVESICKRIIIVNNGVIVADDTKENIIKN 219 >alr1619 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 359 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 14/218 (6%), Positives = 32/218 (14%), Gaps = 1/218 (0%) Query: 3 LQIEQVSKSYGAKHALSGITLKLKPG-VTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 V +H L + + ++ N G L + G Sbjct: 2 QAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLE 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 + + L + + A Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 122 XANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSGD 181 + +G N + + D + L+ + Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 182 RIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLI 219 + I Sbjct: 182 CEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSP 219 >CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 310 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 3 LQIEQVSKSYGAKHALSGITLKLKPG-VTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 L++ ++K YG A++ I+ K++ G V GLLGPNGAGKST++ M++T+ PT G I + Sbjct: 2 LELTNITKKYGDFTAVNNISFKIEDGEVFGLLGPNGAGKSTIVSMISTVISPTSGDITVD 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 + +P ++K +G +PQD +Y +L+ + LE+ + GL+ + + R Sbjct: 62 NKLLRQKPTEIKKVMGIVPQDIALYESLSAKDNLEFFGCLYGLNGKELKERVNEVLKIIE 121 Query: 122 XANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSGD 181 + + + V FSGGM++RV I +L+N+P LLI+DEPTVG+DP R + L+ + Sbjct: 122 LEDKKDQAVEEFSGGMKRRVNIGVALMNNPKLLILDEPTVGIDPQSRNHILETVKKLNKE 181 Query: 182 R--IIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQK 225 R +I ++H + ++E + IA++ G+L+ + L + + K Sbjct: 182 RGMTVIYTSHYMEEVEYLCKRIAIVDHGKLIALGTKDELKEKSKAK 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,926,822 Number of extensions: 778320 Number of successful extensions: 9857 Number of sequences better than 1.0e-05: 1887 Number of HSP's gapped: 7605 Number of HSP's successfully gapped: 2026 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)