BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0027.p (177 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yngB [M] COG1210 UDP-glucose pyrophosphorylase 161 4e-40 BH3652 [M] COG1210 UDP-glucose pyrophosphorylase 142 2e-34 CAC2335 [M] COG1210 UDP-glucose pyrophosphorylase 142 4e-34 BS_gtaB [M] COG1210 UDP-glucose pyrophosphorylase 139 2e-33 BS_ggaAa [M] COG1210 UDP-glucose pyrophosphorylase 136 1e-32 >BS_yngB [M] COG1210 UDP-glucose pyrophosphorylase Length = 297 Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 85/153 (55%), Positives = 107/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVSE PAL Q+M +Y+ +VGVQ V +VSKYGII + G+ V+ V+ LVEKPSP Sbjct: 136 MVSETPALRQLMDVYDVYGTEVVGVQSVLPEDVSKYGIINTSGSQGHVYEVNDLVEKPSP 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRY+L SIFSVL + RGAG E QLTDAL EVCR E + A L+G RYD Sbjct: 196 EEAPSEIAVMGRYVLNSSIFSVLKTIGRGAGNEIQLTDALREVCRKEPIHARLLEGNRYD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDK G +A+ E+GL R E+R QL+ YL ++ Sbjct: 256 IGDKLGCFKASTEIGLMRPEMRSQLLAYLEDVI 288 >BH3652 [M] COG1210 UDP-glucose pyrophosphorylase Length = 297 Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 66/152 (43%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 3 SEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVV--SGLVEKPSP 60 S+ P L Q++ ++++ ++VGVQ VP +VSKYGI++ G+ +V+ +G VEKP Sbjct: 136 SDVPCLKQLIDVFDRYHSSVVGVQEVPNEDVSKYGIVSPKGSEIEANVIHAAGFVEKPKL 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS AIMGRY+L+P IF +L L GAGGE QLTDA+ + ++ +LA + G RYD Sbjct: 196 EEAPSNYAIMGRYVLRPEIFDILENLPPGAGGEIQLTDAIKVLNESQVVLAYNFDGVRYD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGL 152 +GDKFG+I+AT+++ L+R++L + Y++ + Sbjct: 256 VGDKFGFIKATIDLALQRDDLSEDVAQYIKDI 287 >CAC2335 [M] COG1210 UDP-glucose pyrophosphorylase Length = 303 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 94/144 (65%) Query: 6 PALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSPQAAPS 65 P L Q++ Y + + +I+GVQ VP +EVSKYGI+ GV+ V LVEKP + APS Sbjct: 139 PCLKQLINCYNEYKTSILGVQRVPNSEVSKYGIVNGMHIEDGVYKVKDLVEKPKQEEAPS 198 Query: 66 TNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYDIGDKF 125 AI+GRYI+ PSIF +L + G G E QLTDAL + + E + A G+RYD+GDK Sbjct: 199 DLAILGRYIITPSIFDILDNTKPGKGDEIQLTDALKTLMKTEAMYAYVFSGRRYDVGDKL 258 Query: 126 GYIQATLEMGLEREELRPQLVPYL 149 G++QAT+E L+REEL+ + YL Sbjct: 259 GFLQATVEYALKREELKKPFMNYL 282 >BS_gtaB [M] COG1210 UDP-glucose pyrophosphorylase Length = 292 Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 97/155 (62%) Query: 3 SEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSPQA 62 +E P L Q+M YE++ +I+GVQ VP E +YGII + + V VEKP Sbjct: 137 AETPGLRQLMDEYEKTLSSIIGVQQVPEEETHRYGIIDPLTSEGRRYQVKNFVEKPPKGT 196 Query: 63 APSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYDIG 122 APS AI+GRY+ P IF L + + GAGGE QLTDA+ ++ + + A D +GKRYD+G Sbjct: 197 APSNLAILGRYVFTPEIFMYLEEQQVGAGGEIQLTDAIQKLNEIQRVFAYDFEGKRYDVG 256 Query: 123 DKFGYIQATLEMGLEREELRPQLVPYLRGLLGSLE 157 +K G+I TLE ++ +ELR QLVP++ GLL E Sbjct: 257 EKLGFITTTLEFAMQDKELRDQLVPFMEGLLNKEE 291 >BS_ggaAa [M] COG1210 UDP-glucose pyrophosphorylase Length = 446 Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 9/155 (5%), Positives = 26/155 (16%) Query: 3 SEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSPQA 62 + + + ++ +++ + S A Sbjct: 43 VDSSPQICESFKNLYPNNIKIMKIENSGPSAARNCGLSNVSERSKFIGFLDSDDAFSQNA 102 Query: 63 APSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYDIG 122 S + GG L Sbjct: 103 LQSVYDFFCDSEHVNIAVLPVYYTGEKEGGHKLNNRFEKGTRVINILNDYKAIHFYIGGT 162 Query: 123 DKFGYIQATLEMGLEREELRPQLVPYLRGLLGSLE 157 + + + E + + + + LL Sbjct: 163 FYRRHTLTSTVLFDESIKFWEDAIFFNQLLLKEKR 197 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,227,670 Number of extensions: 563350 Number of successful extensions: 814 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 810 Number of HSP's successfully gapped: 35 Length of query: 177 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 78 Effective length of database: 26,960,365 Effective search space: 2102908470 Effective search space used: 2102908470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 112 (47.8 bits)