BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0026.p
         (134 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yngB [M] COG1210 UDP-glucose pyrophosphorylase                     177   3e-45
CAC2335 [M] COG1210 UDP-glucose pyrophosphorylase                     171   3e-43
BH3652 [M] COG1210 UDP-glucose pyrophosphorylase                      164   5e-41
BS_gtaB [M] COG1210 UDP-glucose pyrophosphorylase                     160   6e-40
BH3717 [M] COG1210 UDP-glucose pyrophosphorylase                      154   5e-38

>BS_yngB [M] COG1210 UDP-glucose pyrophosphorylase
          Length = 297

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 94/120 (78%)

Query: 2   KIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNKK 61
           K+RKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEA  SGIE I+I+TGRNK+
Sbjct: 4   KVRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAAESGIEDILIITGRNKR 63

Query: 62  SIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFIG 121
           SIEDHFD+S                  +Q I+ LA IHYIRQKEPLGLGHA+ CAE FIG
Sbjct: 64  SIEDHFDRSAELEFNLREKGKTETLKEMQQIADLANIHYIRQKEPLGLGHAVLCAEHFIG 123


>CAC2335 [M] COG1210 UDP-glucose pyrophosphorylase
          Length = 303

 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 95/122 (77%)

Query: 1   VKIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNK 60
           ++++KA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYI+EEAV+SGIE I+++TGRNK
Sbjct: 1   MRVKKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIIEEAVQSGIEEILVITGRNK 60

Query: 61  KSIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFI 120
           ++IEDHFDKS                  V+ IS LA I+YIRQKEP GLGHAI+CA  F+
Sbjct: 61  RAIEDHFDKSFELESELESHNKKELLKVVKDISNLANIYYIRQKEPRGLGHAINCARTFV 120

Query: 121 GG 122
           G 
Sbjct: 121 GN 122


>BH3652 [M] COG1210 UDP-glucose pyrophosphorylase
          Length = 297

 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 90/120 (75%)

Query: 3   IRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNKKS 62
           ++KA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYI+EEA+ SGIE II+VTGR K++
Sbjct: 3   VKKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIIEEAIESGIEDIIVVTGRGKRA 62

Query: 63  IEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFIGG 122
           IEDHFDKS                  V+AIS +  IHYIRQKE  GLGHAI CA +FIG 
Sbjct: 63  IEDHFDKSFELEETLEKKNKSKLLEEVKAISSMTNIHYIRQKEANGLGHAIWCARKFIGN 122


>BS_gtaB [M] COG1210 UDP-glucose pyrophosphorylase
          Length = 292

 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 89/120 (74%)

Query: 2   KIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNKK 61
           K+RKA+IPAAGLGTRFLPATKA PKEMLPIVDKP IQYI+EEAV +GIE IIIVTG++K+
Sbjct: 3   KVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAVEAGIEDIIIVTGKSKR 62

Query: 62  SIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFIG 121
           +IEDHFD S                  V+  S LA IHYIRQKEP GLGHA+ CA  FIG
Sbjct: 63  AIEDHFDYSPELERNLEEKGKTELLEKVKKASNLADIHYIRQKEPKGLGHAVWCARNFIG 122


>BH3717 [M] COG1210 UDP-glucose pyrophosphorylase
          Length = 293

 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 86/120 (71%), Gaps = 1/120 (0%)

Query: 2   KIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNKK 61
           KIRKA+IPAAGLGTRFLPATKA PKEMLPIVDKP IQYIVEEA+ SGIE IIIVTG+ K+
Sbjct: 3   KIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAISSGIEDIIIVTGKGKR 62

Query: 62  SIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFIG 121
           +IEDHFD S                  V   S    IHYIRQKEP GLGHA+ CA +FIG
Sbjct: 63  AIEDHFDHSFELEQTLAEKEKYDLLEKVNE-STKVDIHYIRQKEPKGLGHAVWCARKFIG 121


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,181,719
Number of extensions: 248004
Number of successful extensions: 733
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 100
Length of query: 134
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 39
Effective length of database: 27,421,701
Effective search space: 1069446339
Effective search space used: 1069446339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)