BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0025.p (340 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0194 [M] COG0463 Glycosyltransferases involved in cell wall b... 358 9e-99 mll5672 [M] COG0463 Glycosyltransferases involved in cell wall b... 272 5e-73 sll0501 [M] COG0463 Glycosyltransferases involved in cell wall b... 266 4e-71 lin2695 [M] COG0463 Glycosyltransferases involved in cell wall b... 253 3e-67 XF0176 [M] COG0463 Glycosyltransferases involved in cell wall bi... 243 3e-64 >CAC0194 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 326 Score = 358 bits (918), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 224/326 (68%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 M V YS+++P+YNEE VI E Y R+KK+M + E YE+++VNDGS D+ +E+ Sbjct: 1 MYNTVVYSIVVPLYNEELVIDENYMRLKKIMDSLKENYEIMYVNDGSKDSTMNKVEKICE 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D+ +KL++ SRNFGHQ AI+AGM+ S GDA+++IDADLQDPPE+I MI +WK+GY+VV Sbjct: 61 KDKRIKLVNFSRNFGHQCAISAGMELSAGDAIIVIDADLQDPPEVIPQMIDKWKDGYDVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 Y KR+KR GES KK+TA +FYR+LR T+I IPVDTGDFRLIDRKVC+ L LPE+NR+ Sbjct: 121 YGKRLKRKGESFLKKFTAKIFYRLLRSITNIDIPVDTGDFRLIDRKVCDTLSSLPERNRY 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVGF+Q +E+ R ER AG +KYPLK+M+KL+ DGITSFSYKP Sbjct: 181 VRGLVSWVGFKQTFVEFTRQERFAGASKYPLKKMLKLAFDGITSFSYKPLVASTYLGGLM 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 +YV L++ + ++ I L G + IILGILG+Y+GRI DE+K R Sbjct: 241 FLLGLLAFIYVTAKNLYSHKTILTLGLILAINLCMFGLIFIILGILGQYIGRISDESKAR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRVAQLN 338 P YI+ + ++ E +LN Sbjct: 301 PNYIIASTINYKENIKEVEPSEVKLN 326 >mll5672 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 301 Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 0/323 (0%), Positives = 0/323 (0%), Gaps = 1/323 (0%) Query: 17 VRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTYWDES 76 + + + ++ ++ + + +E Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 Query: 77 VKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAKR 136 + L + + + D +L +V + Sbjct: 72 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 131 Query: 137 IKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRGL 196 L + F ++ S + + VDT + + Sbjct: 132 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQR 191 Query: 197 VSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXXX 256 ++ + L ++R + G Sbjct: 192 FMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKG 251 Query: 257 XXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLYI 316 + Sbjct: 252 AKIKTIGI- 310 Query: 317 VQEFYSGRKQQSAAEQRVAQLNK 339 Sbjct: 311 333 >sll0501 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 318 Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 200/307 (65%), Gaps = 2/307 (0%) Query: 17 VRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTD-NCAQMIEEYTYWDE 75 + S++IPMYNEE ++ + R+ +V+ YE++ VNDGS D Q+I+ Y + Sbjct: 3 IELSIVIPMYNEEDNLEHLFARLLEVLTPLKITYEIICVNDGSKDKTLKQLIDCYQS-NR 61 Query: 76 SVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAK 135 +K+++LSRNFG +IA++AG+DY+ G+AV+ IDADLQDPPELI +++ +W+ GY++VYA Sbjct: 62 QIKIVNLSRNFGKEIALSAGIDYAQGNAVIPIDADLQDPPELIHELVDKWREGYDIVYAT 121 Query: 136 RIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRG 195 R R GE+ K++TA +FY+V+ T+I IP +TGDFRL+DRKV +K+LPE+ RF++G Sbjct: 122 RRSRQGETWVKQFTAKMFYKVIGRMTEIKIPPNTGDFRLMDRKVVNAIKQLPERTRFMKG 181 Query: 196 LVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXX 255 L +WVG+RQ + ++R+ R G+TK+ ++ +LDGI SFS P Sbjct: 182 LFAWVGYRQTFVLFDREPRFQGQTKWNYWKLWNFALDGIFSFSLLPLKVWTYLGSIISLL 241 Query: 256 XXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLY 315 +++ + V G+AS++ L G LI LG++GEY+GR+Y+E K RPLY Sbjct: 242 SLAYASFLILKTITLGVDVPGYASLMVAILFLGGVQLISLGVIGEYLGRVYEEVKARPLY 301 Query: 316 IVQEFYS 322 +V + + Sbjct: 302 LVSDLWG 308 >lin2695 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 301 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 0/309 (0%), Positives = 0/309 (0%), Gaps = 3/309 (0%) Query: 20 SVIIPMYNEEAVIQETYRRIKKVMGTTGEAY--ELLFVNDGSTDNCAQMIEEYTYWDESV 77 + + + + ++ Sbjct: 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 64 Query: 78 KLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAKRI 137 L + +++ A +VI + ++ + + G V Sbjct: 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN 124 Query: 138 KRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRGLV 197 K + L + + + +P+ +D K LPE Sbjct: 125 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDY 184 Query: 198 SWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXXXX 257 ++ E+L L + + ++ S Sbjct: 185 ITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKK 244 Query: 258 XXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLYIV 317 Sbjct: 245 304 Query: 318 QEFYSGRKQ 326 Sbjct: 305 - 312 >XF0176 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 378 Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 187/324 (57%), Gaps = 12/324 (3%) Query: 20 SVIIPMYNEEAVIQETYRRIKKVMGTTGEA-YELLFVNDGSTDNCAQMIEEYTYWDESVK 78 +V++P YNE + + RI + T E LL+V+DGS D +IE D V Sbjct: 48 TVVVPAYNEAQTLPLLHLRIVAALNTLPELDGRLLYVDDGSNDRTWDIIEALVVNDPRVG 107 Query: 79 LIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVVYAKRIK 138 I LSRNFG +IAITAG+D + AV+++DAD QDPPELI + W+ GY+ VY R++ Sbjct: 108 GIKLSRNFGKEIAITAGLDNTPFGAVLLLDADGQDPPELIPQFVARWRAGYDNVYGTRLE 167 Query: 139 RNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRFVRGLVS 198 R GE L K++ A+ FYR++ + IP DTGDFRL+ + + L+++ E++RF++GL Sbjct: 168 RQGEGLVKRFLAASFYRMIGRLSPTPIPTDTGDFRLLSPRALQALRQIRERHRFMKGLFG 227 Query: 199 WVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXXXXXXXX 258 WVGFRQ A+ Y R+ RL+G +K+ R+ +L+GITSFS P Sbjct: 228 WVGFRQIALPYRREPRLSGGSKFTFWRLWNFALEGITSFSTAPLRVTTYLGLITAVFAFG 287 Query: 259 XXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGRPLYIV- 317 ++++ AL V GW +M+ + L G LI LG++GEY+GR+YDE+K RPLY + Sbjct: 288 YGVWIVLKALILGDRVPGWPTMMTVILLLGGVQLIALGLIGEYLGRLYDESKRRPLYFID 347 Query: 318 ----------QEFYSGRKQQSAAE 331 Q+ G+ Q+ A Sbjct: 348 TAAGIAECRPQQIIDGKIPQNTAS 371 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,766,618 Number of extensions: 984387 Number of successful extensions: 2116 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 2087 Number of HSP's successfully gapped: 67 Length of query: 340 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 233 Effective length of database: 26,037,693 Effective search space: 6066782469 Effective search space used: 6066782469 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)