BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0023.p
         (181 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr0163 [S] COG3797 Uncharacterized protein conserved in bacteria     112   3e-25
mll0605 [S] COG3797 Uncharacterized protein conserved in bacteria     103   2e-22
SMc01009 [S] COG3797 Uncharacterized protein conserved in bacteria    102   4e-22
SMc00454 [S] COG3797 Uncharacterized protein conserved in bacteria     65   4e-11

>mlr0163 [S] COG3797 Uncharacterized protein conserved in bacteria
          Length = 184

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 2/175 (1%)

Query: 3   TYIALLRGINVGGNKIIKMQALKAMFESLGYSRVRTYIQSGNVVFESNEAQAAELEAVIS 62
            +IAL  GINVGGN+I+KM  L++ FE LG+S V TY+QSGNVVF + +  A  L   I 
Sbjct: 5   VFIALFSGINVGGNRIVKMAELRSFFEDLGFSDVATYVQSGNVVFRAGKGDATALTRQIE 64

Query: 63  AAIKETFGFDVSVMIRTLEELEAAIAGNPFEPPAEEGYKRLYISFLAEAPSKEALEKLRP 122
           AA ++ +GF   +++R L   E  ++ NP+ P A   + +L+   L   P+ E + +L  
Sbjct: 65  AAFEKKWGFHSRILVRDLSWFERLVSENPY-PEAAADHTKLHAYALDREPTAEEVARLAE 123

Query: 123 YEEGADKLHVAGKEMYTLYEVSASQSPLFKVQLDKLLGTSITARNWNTVNKLAAM 177
              G ++  V G  +Y        +S +F   + ++L    TARNW +V  L  M
Sbjct: 124 KCTGPERFEVKGDVLYLSAPDGLGKS-VFANLIPRVLKVPGTARNWRSVLALLEM 177


>mll0605 [S] COG3797 Uncharacterized protein conserved in bacteria
          Length = 181

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 1   MNTYIALLRGINVGGNKIIKMQALKAMFESLGYSRVRTYIQSGNVVFESNEAQAAELEAV 60
           M TY+ALL  I +G  + + M  LKAM E LG   VRT + +GN+VFE+      +LE  
Sbjct: 1   MQTYVALLYSIILGEGRRVVMADLKAMAEGLGLKNVRTLVATGNLVFEARATDIGKLEQR 60

Query: 61  ISAAIKETFGFDVSVMIRTLEELEAAIAGNPFEPPAEEGYKRLYISFLAEAPSKEALEKL 120
           +  A ++TFG  V +++RT EE     AGNPF   + E   ++ +  + +    E +  L
Sbjct: 61  LETAFEKTFGRHVDIIVRTAEEWLKLAAGNPFPADSAEAGDQVAVRVMRKPAPVEDVAAL 120

Query: 121 RPYEEGADKLHVAGKEMYTLYEVSASQSPLFKVQLDKLLGTSITARNWNTVNKLAAM 177
           + Y    +K+     +++ ++      S L      K LG   T+RNWNTV KLA M
Sbjct: 121 QAYAAEDEKVLPCAGDIWVVFSRERPTSRLLATMNHKRLGIG-TSRNWNTVRKLAEM 176


>SMc01009 [S] COG3797 Uncharacterized protein conserved in bacteria
          Length = 179

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 1   MNTYIALLRGINVGGNKIIKMQALKAMFESLGYSRVRTYIQSGNVVFESNEAQAAELEAV 60
           M  Y+ALL  I +G  + + M  LKAM E+LG    RT + +GN++FE+ E   AELEA 
Sbjct: 1   MKAYVALLHSIVLGDGRRVVMADLKAMAEALGCRAPRTLVATGNLLFEAPEKPLAELEAE 60

Query: 61  ISAAIKETFGFDVSVMIRTLEELEAAIAGNPFEPPAEEGYKRLYISFLAEAPSKEALEKL 120
           +  A ++TFG  V +++R+ E+     AGNPF   +E     +++  +      +  EKL
Sbjct: 61  LEKAFEKTFGRHVDIIVRSAEDWSRLAAGNPFLAESERDPASVHVRVMRLPLEVDMREKL 120

Query: 121 RPYEEGADKLHVAGKEMYTLYEVSASQSPLFKVQLDKLLGTSITARNWNTVNKLAAM 177
             Y    +++ +   +++  +   AS+S L      K LG   T RNWNTV  L  M
Sbjct: 121 LGYCSRGERVAIVDGDLWVDFAGKASESKLLGALTTKRLGIG-TVRNWNTVKGLRGM 176


>SMc00454 [S] COG3797 Uncharacterized protein conserved in bacteria
          Length = 100

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 1  MNTYIALLRGINVGGNKIIKMQALKAMFESLGYSRVRTYIQSGNVVFESNEAQAAELEAV 60
          M  Y+ALLR +NVGG   + M  LKA+ + LG++  +T+IQSGNVVF S+  + A ++A 
Sbjct: 1  MPVYVALLRAVNVGGTGKLAMADLKAVCDELGFAGAKTFIQSGNVVFRSDLPEPA-VQAK 59

Query: 61 ISAAIKETFGFDVSVMIRTLEELE 84
          +  A+    G    V++R+  +L+
Sbjct: 60 LEQALAAKMGKAPGVLLRSRRQLD 83


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,262,385
Number of extensions: 481963
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 4
Length of query: 181
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 81
Effective length of database: 26,845,031
Effective search space: 2174447511
Effective search space used: 2174447511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)