BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0021.p
         (98 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yczJ [R] COG2329 Uncharacterized enzyme involved in biosynthe...   127   5e-30
DR1636 [R] COG2329 Uncharacterized enzyme involved in biosynthes...   120   7e-28
AGpA263 [R] COG2329 Uncharacterized enzyme involved in biosynthe...    67   9e-12

>BS_yczJ [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
          extracellular polysaccharides
          Length = 95

 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          M+ EAAML I+ GL  +FE +F+ A+ +IS ++GY+ H L  C+E+ HKYLLLV+W  LE
Sbjct: 1  MVREAAMLHIKEGLEQEFEDAFRQAAPIISGMKGYITHSLSKCMEETHKYLLLVEWETLE 60

Query: 61 DHTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRI 95
          DHT GFR SS+YQEWKA+LH +Y+PFP VEHF  +
Sbjct: 61 DHTEGFRGSSEYQEWKALLHRFYTPFPTVEHFQDV 95


>DR1636 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 211

 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 3/96 (3%), Positives = 21/96 (21%)

Query: 2   ILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLED 61
           +  ++  ++   +    + +  + +   + +                     +K   L +
Sbjct: 24  LNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYN 83

Query: 62  HTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRINL 97
                   +     +            +E    +  
Sbjct: 84  SKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGR 119


>AGpA263 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
          extracellular polysaccharides
          Length = 444

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 4/96 (4%), Positives = 11/96 (11%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          M + A   +           S     +   S                             
Sbjct: 1  MKIAALRPEQPTPSGVDHRISIFEGDLGALSRSSGHAGLSVSNELFKWAGRSPSTLAWDF 60

Query: 61 DHTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRIN 96
                   +     +           +       +
Sbjct: 61 TALALGVVGADRLVNRLQTSADGWTREIDLTVAVSD 96


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,785,261
Number of extensions: 202587
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 38,378,431
Length adjustment: 67
Effective length of query: 31
Effective length of database: 30,651,053
Effective search space: 950182643
Effective search space used: 950182643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)