BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0012.p
         (108 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv0081 [K] COG0640 Predicted transcriptional regulators                91   5e-19
MT0088 [K] COG0640 Predicted transcriptional regulators                91   5e-19
DR1613 [K] COG0640 Predicted transcriptional regulators                80   6e-16
CC2864 [K] COG0640 Predicted transcriptional regulators                66   1e-11
Cgl0847 [K] COG0640 Predicted transcriptional regulators               65   3e-11

>Rv0081 [K] COG0640 Predicted transcriptional regulators
          Length = 114

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 5   IQQFKTEFFKALAHPMRIRILELLSEGEKNVNEL-QAILGSEGSAVSQQLAVLRAKNVVA 63
           + + K EFFK LAHP RIRILELL E +++V EL  + +G E S +SQQL VLR   VVA
Sbjct: 6   LYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVA 65

Query: 64  SVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLEGIRS 107
           + ++G  +IYS+  P I +LLAV +++    L + +++LE +R+
Sbjct: 66  ARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRA 109


>MT0088 [K] COG0640 Predicted transcriptional regulators
          Length = 114

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 5   IQQFKTEFFKALAHPMRIRILELLSEGEKNVNEL-QAILGSEGSAVSQQLAVLRAKNVVA 63
           + + K EFFK LAHP RIRILELL E +++V EL  + +G E S +SQQL VLR   VVA
Sbjct: 6   LYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVA 65

Query: 64  SVKEGTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLEGIRS 107
           + ++G  +IYS+  P I +LLAV +++    L + +++LE +R+
Sbjct: 66  ARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRA 109


>DR1613 [K] COG0640 Predicted transcriptional regulators
          Length = 109

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 61/101 (60%)

Query: 8   FKTEFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKNVVASVKE 67
           +K   F+AL HP+R+ IL+ L +GEK V +LQ + G E + +SQ L VLR +++V S ++
Sbjct: 8   YKAALFRALGHPLRLAILDSLRDGEKTVTQLQDLTGGEQAGISQHLKVLRHQHLVTSRRQ 67

Query: 68  GTTVIYSLRDPLIKDLLAVTKQIFDNHLVNAISLLEGIRSE 108
           GT   Y   D  +   L + +Q+++N L      L+ ++SE
Sbjct: 68  GTLTYYRTEDAAVYLFLDLGRQVYENQLQRQREQLDHLQSE 108


>CC2864 [K] COG0640 Predicted transcriptional regulators
          Length = 123

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query: 11  EFFKALAHPMRIRILELLSEGEKNVNELQAILGSEGSAVSQQLAVLRAKNVVASVKEGTT 70
           +  +AL++  R+ IL  L+EGE++V ++Q ++G   SA+SQ LAVLR + VVA+ +E TT
Sbjct: 24  KLLRALSNERRLMILCQLAEGERSVGQIQPLVGLSQSALSQHLAVLRDEGVVAARREATT 83

Query: 71  VIYSLRDPLIKDLLAVTKQIF 91
           V Y + DP    ++A   +IF
Sbjct: 84  VWYRIADPAALKVVATLAEIF 104


>Cgl0847 [K] COG0640 Predicted transcriptional regulators
          Length = 104

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 5  IQQFKTEFFKALAHPMRIRILELL-SEGEKNVNELQAILGSEGSAVSQQLAVLRAKNVVA 63
          I Q K + FK LAHP RIR LE++ +  E +V ++   +  E S VSQ L VLR   +V+
Sbjct: 9  IYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKVLRKFGLVS 68

Query: 64 SVKEGTTVIYSLRDPLIKDLLAVTKQIF 91
          S +EG  V Y L  P + D L V++ + 
Sbjct: 69 SQREGLVVYYRLTYPEVADFLKVSRSLL 96


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,493,812
Number of extensions: 234115
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 37
Length of query: 108
Length of database: 38,378,431
Length adjustment: 76
Effective length of query: 32
Effective length of database: 29,613,047
Effective search space: 947617504
Effective search space used: 947617504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)