BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0009.p
         (84 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykrV [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase      117   6e-27
BH1060 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase       105   1e-23
lin0314 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase      103   6e-23
all4327 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase       86   2e-17
CC1382 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase        82   2e-16

>BS_ykrV [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 398

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query: 1   LRELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGL 60
            RE+GW V AP GSFFAWLPVPEGYTS+ F+DLLL++A+V VA G GFGEYGEGYVR GL
Sbjct: 310 CREIGWDVTAPAGSFFAWLPVPEGYTSEQFSDLLLEKANVAVAAGNGFGEYGEGYVRVGL 369

Query: 61  VSDEARLAEAVKRIAGLKLFA 81
           ++ E RL EA  RI  L LF 
Sbjct: 370 LTSEERLKEAAYRIGKLNLFT 390


>BH1060 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 395

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 62/83 (74%)

Query: 2   RELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGLV 61
           R +GW VEAP GSFFAW PVP G+TS+ FA  LL +A VVVAPG GFGE+GEGYVR  L+
Sbjct: 312 RAIGWDVEAPKGSFFAWFPVPSGFTSEEFATYLLKKARVVVAPGKGFGEHGEGYVRVALL 371

Query: 62  SDEARLAEAVKRIAGLKLFAPDR 84
           +D A+L EA+ R+  L +F+  R
Sbjct: 372 ADIAKLEEAMGRVGKLDVFSNKR 394


>lin0314 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 301

 Score =  103 bits (257), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 0/78 (0%), Positives = 0/78 (0%)

Query: 3   ELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGLVS 62
                                                                       
Sbjct: 310                                                              369

Query: 63  DEARLAEAVKRIAGLKLF 80
                             
Sbjct: 370                    387


>all4327 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 390

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 1   LRELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGL 60
           L+ LGW +E P  + + W+PVP GYTS  F  LLLD+  +VV PG+G+G  GEGY R  L
Sbjct: 309 LQSLGWPIEPPKATLYVWVPVPPGYTSTEFTTLLLDKCGIVVPPGVGYGASGEGYFRVAL 368

Query: 61  VSDEARLAEAVKRI--AGLK 78
              + RL EA++R+  AG++
Sbjct: 369 TISDERLHEAIQRMQDAGIR 388


>CC1382 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 406

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 1   LRELGWKVEAPGGSFFAWLPVPEGYT---SQSFADLLLDEAHVVVAPGIGFGEYGEGYVR 57
           ++  GW +  P  S FAW  +PE Y    S  F+ LL++EA V VAPGIGFGEYGEGYVR
Sbjct: 309 MKAAGWDIPNPPASMFAWAKIPEAYREAGSMLFSRLLIEEAGVAVAPGIGFGEYGEGYVR 368

Query: 58  AGLVSDEARLAEAVKRI 74
            GLV +E R+ +A + +
Sbjct: 369 IGLVENEHRIRQAARNV 385


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,128,881
Number of extensions: 278917
Number of successful extensions: 652
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 52
Length of query: 84
Length of database: 38,378,431
Length adjustment: 54
Effective length of query: 30
Effective length of database: 32,150,395
Effective search space: 964511850
Effective search space used: 964511850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)