BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0007.p
         (98 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ycnE [S] COG1359 Uncharacterized conserved protein                  93   1e-19
lin0150 [S] COG1359 Uncharacterized conserved protein                  70   8e-13
lin2723 [S] COG1359 Uncharacterized conserved protein                  62   1e-10
L178303 [S] COG1359 Uncharacterized conserved protein                  57   7e-09
DR0492 [S] COG1359 Uncharacterized conserved protein                   55   3e-08

>BS_ycnE [S] COG1359 Uncharacterized conserved protein
          Length = 95

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 61/88 (69%)

Query: 1  MIIIHAVMQVNPALKEKFLAEAKQLLAATHQEEGNLSYELYNHFEQDNTYIMVETWRDME 60
          MI++ A ++V P  +E+FL+EA+ L+  +  EEGN  Y+L+    ++NT++M+E W+D  
Sbjct: 1  MIVLQAYIKVKPEKREEFLSEAQSLVQHSRAEEGNAQYDLFEKVGEENTFVMLEKWKDEA 60

Query: 61 AVASHNTSSHFTGFAAKAPEFLTAPLDV 88
          A+  HN ++HF GF AK  E L+APLDV
Sbjct: 61 AMKFHNETAHFQGFVAKGKELLSAPLDV 88


>lin0150 [S] COG1359 Uncharacterized conserved protein
          Length = 96

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%)

Query: 1  MIIIHAVMQVNPALKEKFLAEAKQLLAATHQEEGNLSYELYNHFEQDNTYIMVETWRDME 60
          M+ I A M +     E FL  AK+++AA+  E GN  YEL    E +  + M+E W DM+
Sbjct: 1  MLHIEAQMTIKKEQIEAFLQAAKEVIAASQAETGNHGYELVQSTENETVFYMLEKWADMD 60

Query: 61 AVASHNTSSHFTGFAAKAPEFLTAPLDVKV 90
          A+  HN S HF  F   A  F+  PL++ V
Sbjct: 61 AIQQHNESEHFKKFQNAATNFVAKPLEISV 90


>lin2723 [S] COG1359 Uncharacterized conserved protein
          Length = 94

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query: 1  MIIIHAVMQVNPALKEKFLAEAKQLLAATHQEEGNLSYELYNHFEQDNTYIMVETWRDME 60
          MI I A +QV P   E FL E + ++  +  E GN  YEL    +  +T+ ++E W D  
Sbjct: 1  MIHIEAKIQVKPDFIESFLKEVELVIQNSLSEAGNHGYELVRSVKNASTFYLLEKWADEA 60

Query: 61 AVASHNTSSHFTGFAAKAPEFLTAPLDVKV 90
          A+  HN++ H+  F  + P FL  P +V V
Sbjct: 61 AIQFHNSTEHYKRFKREIPAFLAFPTEVDV 90


>L178303 [S] COG1359 Uncharacterized conserved protein
          Length = 94

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 1  MIIIHAVMQVNPALKEKFLAEAKQLLAATHQEEGNLSYELYNHFEQDNTYIMVETWRDME 60
          MII++A   +    K +FL E + L++A+ ++EG L Y LY   +    ++M+E W   E
Sbjct: 1  MIIVNAKFYIKEDKKSQFLKEIEGLISASKKDEGCLEYSLYESTDNQLEFVMIENWESQE 60

Query: 61 AVASHNTSSHFTGFA 75
          A+  HNT+     FA
Sbjct: 61 AIEKHNTNPLLLAFA 75


>DR0492 [S] COG1359 Uncharacterized conserved protein
          Length = 101

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 2  IIIHAVMQVNPALKEKFLAEAKQLLAATHQEEGNLSYELYNHFEQDNTYIMV-ETWRDME 60
          + +HAV+   P    +  AE + +  A+ QEEGNL Y+L     +    + + E +RD  
Sbjct: 4  VSVHAVLTPKPEHLTEVEAELRTMARASRQEEGNLRYDLARERTESGVRLHISERYRDEA 63

Query: 61 AVASHNTSSHFTGFAAKAPEFLTAPLDVKV 90
          AV +H  S+H+  + AKA  +L  P  V V
Sbjct: 64 AVQAHRDSAHYQAYRAKAGAWLAEPPQVSV 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,063,886
Number of extensions: 276818
Number of successful extensions: 2055
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 38,378,431
Length adjustment: 67
Effective length of query: 31
Effective length of database: 30,651,053
Effective search space: 950182643
Effective search space used: 950182643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)