BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0002.p
         (173 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2400 [Q] COG1020 Non-ribosomal peptide synthetase modules and ...    55   6e-08
AGl2309_1 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    54   9e-08
BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    54   1e-07
all2644_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    54   2e-07
all1695_1 [Q] COG1020 Non-ribosomal peptide synthetase modules a...    52   4e-07

>PA2400 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 346

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 0/78 (0%), Positives = 0/78 (0%)

Query: 31  YWHNLIGNGTHALNMPLDYVRPAARSFAGEVVMLRTSGELACRLERLAEREAVSAETALL 90
                                                                       
Sbjct: 427                                                              486

Query: 91  ACYILLLSKYTGQDTVCV 108
                             
Sbjct: 487                    504


>AGl2309_1 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 346

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 4/89 (4%), Positives = 7/89 (7%), Gaps = 1/89 (1%)

Query: 20  GQPACDGQIGEYWHNLIGNGTHALNMPLDYVRPAARSFAGEVVMLRTSGELACRLERLAE 79
                          +       L                       +            
Sbjct: 208 YSLLNRSFE-VGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYS 266

Query: 80  REAVSAETALLACYILLLSKYTGQDTVCV 108
            E      A              Q  +  
Sbjct: 267 GEQTQKAVAAYVDIARRHGLDPAQMALAF 295


>BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 792

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 2/78 (2%), Positives = 13/78 (16%)

Query: 31  YWHNLIGNGTHALNMPLDYVRPAARSFAGEVVMLRTSGELACRLERLAEREAVSAETALL 90
              +         ++    V  +  + +G   ++  +         +             
Sbjct: 186 VALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDEFYVHK 245

Query: 91  ACYILLLSKYTGQDTVCV 108
                       +     
Sbjct: 246 PTLAANRPAIVRRTMGSK 263


>all2644_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 346

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 13/79 (16%)

Query: 30  EYWHNLIGNGTHALNMPLDYVRPAARSFAGEVVMLRTSGELACRLERLAEREAVSAETAL 89
                ++        +   +    A     E V L     L                 A 
Sbjct: 196 HDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGAR 255

Query: 90  LACYILLLSKYTGQDTVCV 108
              +         Q    V
Sbjct: 256 NTLFSRFTRYSGEQTQKAV 274


>all1695_1 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 346

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 0/93 (0%), Positives = 0/93 (0%)

Query: 16  QVQPGQPACDGQIGEYWHNLIGNGTHALNMPLDYVRPAARSFAGEVVMLRTSGELACRLE 75
                                                                       
Sbjct: 811                                                              870

Query: 76  RLAEREAVSAETALLACYILLLSKYTGQDTVCV 108
                                            
Sbjct: 871                                   903


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,644,349
Number of extensions: 486575
Number of successful extensions: 568
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 74
Effective length of database: 26,960,365
Effective search space: 1995067010
Effective search space used: 1995067010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)