BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0006.p
         (331 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    95   1e-19
CAC1401 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    94   3e-19
BS_ytlC [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    89   1e-17
mll6978 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    87   4e-17
BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    85   1e-16

>CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 279

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           +E+ GV+K F  + ++   LD+V+L ++  EF+ ++GPSGCGKSTL +II GLE+P  G 
Sbjct: 3   IEIKGVSKDFISKEKKVHTLDEVNLSIKKGEFICLLGPSGCGKSTLLNIIAGLEKPTKGI 62

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGEP 174
           V +N   +     + ++M Q+ ALFPW  + DNV    ++K  P
Sbjct: 63  VYLNNMEIKAPGPDRAFMFQESALFPWLKVIDNVEFGMKIKDVP 106


>CAC1401 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 252

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 12/103 (11%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           +++  VTK+F     E  VL  VSL V+  EFVSI+GPSGCGKSTLF+II  L   D+G 
Sbjct: 20  IDIKNVTKSF----DEETVLKDVSLNVKSGEFVSILGPSGCGKSTLFNIITALTDADSGE 75

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGE 173
           V ++        G+I YM Q+  L PW+T+ DNV+L  +LKG+
Sbjct: 76  VKVS--------GDIGYMQQKDLLLPWKTVIDNVVLPLDLKGK 110


>BS_ytlC [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 260

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 58/96 (60%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           L V+ VT  +F  + +T  +  +    E  +F+S +GPSGCGK+TL  II GL +P  G 
Sbjct: 4   LHVDHVTHTYFSIKEKTTAVRDIHFDAEKGDFISFLGPSGCGKTTLLSIIAGLIEPSEGR 63

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLL 166
           V + G+    +   I YM QQ  LFPW++IE+NVLL
Sbjct: 64  VLIEGREPNQKEHNIGYMLQQDYLFPWKSIEENVLL 99


>mll6978 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 276

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 4/117 (3%)

Query: 71  LEVNGVTKAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGT 130
           + ++ VT AF       + +  V+LKV   EF++IVGP+GCGKST+ + + GL +P +GT
Sbjct: 22  VSLDAVTMAF----GGYVAVQDVNLKVSDGEFLAIVGPTGCGKSTILNAVAGLLKPASGT 77

Query: 131 VSMNGKTVTGQRGEISYMPQQPALFPWRTIEDNVLLAGELKGEPXXXXXXXXXHWLG 187
           VS++G+ V G + EI Y+ QQ AL PW+T  +NV L    KG            WL 
Sbjct: 78  VSIDGQPVRGIQNEIGYLFQQDALLPWKTAIENVELGPMFKGVGAADRREQSMRWLA 134


>BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 255

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 4/87 (4%), Positives = 11/87 (12%)

Query: 78  KAFFHRRRETLVLDQVSLKVEPQEFVSIVGPSGCGKSTLFHIIGGLEQPDAGTVSMNGKT 137
           +   H      V             + ++       +                  M  + 
Sbjct: 29  QLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQD 88

Query: 138 VTGQRGEISYMPQQPALFPWRTIEDNV 164
                 +         L          
Sbjct: 89  ARLLPWKSVIDNVGLGLKGQWRDAARR 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,749,595
Number of extensions: 718282
Number of successful extensions: 14425
Number of sequences better than 1.0e-05: 737
Number of HSP's gapped: 14373
Number of HSP's successfully gapped: 741
Length of query: 331
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 224
Effective length of database: 26,037,693
Effective search space: 5832443232
Effective search space used: 5832443232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)