BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0234.0005.p (253 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1399 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 147 2e-35 mll1758 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 138 8e-33 TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 125 5e-29 BH2681 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 112 6e-25 AGl1202 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 107 2e-23 >CAC1399 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 250 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 126/217 (58%), Gaps = 5/217 (2%) Query: 6 NQIWP--PLVAVIFFLGAWQLAVSVFHVPFWMLPSPGDIARESQGNASGIWAHTAATLRL 63 N+++P L+AVI WQL V +P +++PSP DI I +T T+ Sbjct: 9 NKVYPVAALIAVIIL---WQLIVDFRKIPEYVIPSPKDICLTLISEFGTIMQNTKVTIYE 65 Query: 64 TLIGFPVGTGVGLIVALVLHLVPWLKRALYPLLILSQNVPSIALGPLLIIWFGFGLLPKI 123 +L+GF + I+A+++ +++ALYP++++SQ +P+IA+ PL IIWFGFG LPKI Sbjct: 66 SLVGFFIAIIFAFILAIIMDSFQIVRKALYPIIVISQTIPTIAIAPLFIIWFGFGPLPKI 125 Query: 124 VLITLVCFFPVAVAAMGGLAQSDRIMMNYMKMAGANQWQIFTKXXXXXXXXXXXXXXKIS 183 +++ + CFFP+ ++ + G + D+ +N + A++ QIF KI+ Sbjct: 126 IVVVITCFFPIVISLIDGFEKIDKDYINLFRSMKASRIQIFYHLKLPSAMVNLFSGIKIA 185 Query: 184 ATYAVMGAVVAEWIGADKGIGYYMLLQKASYRTDRMF 220 TY +M AV+ EW+G D GIG YM+ K +Y D++F Sbjct: 186 CTYMIMAAVIGEWLGGDGGIGVYMVRAKNAYALDKVF 222 >mll1758 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 273 Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 120/206 (58%) Query: 12 LVAVIFFLGAWQLAVSVFHVPFWMLPSPGDIARESQGNASGIWAHTAATLRLTLIGFPVG 71 +++V L AW+L + + +LP+P + ++ N + + T+R TLIGF Sbjct: 24 VISVGLLLMAWELYATYSGIKPTILPAPSRVFEQAMLNRDALIDNAIPTIRATLIGFACS 83 Query: 72 TGVGLIVALVLHLVPWLKRALYPLLILSQNVPSIALGPLLIIWFGFGLLPKIVLITLVCF 131 G +++++ L+RAL+P+ I+SQ +P +A+ PL+++WFGFGL PKI+L+ LV F Sbjct: 84 LGAAFTLSMLVDFFQPLRRALFPVFIVSQTLPLVAIAPLVVLWFGFGLTPKIMLVALVTF 143 Query: 132 FPVAVAAMGGLAQSDRIMMNYMKMAGANQWQIFTKXXXXXXXXXXXXXXKISATYAVMGA 191 FP+ VA + G ++ + ++ GA +W++F +IS TYAV+GA Sbjct: 144 FPMLVALVQGYEATEVEIGQMLRAMGAGRWRVFVLARLPSALPYFFAGLRISITYAVVGA 203 Query: 192 VVAEWIGADKGIGYYMLLQKASYRTD 217 + AE+ GA KG+G YML K ++R D Sbjct: 204 IFAEYAGAAKGLGIYMLNAKNNFRPD 229 >TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 250 Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 114/210 (54%), Gaps = 7/210 (3%) Query: 9 WPPLVAVIFFLGAWQLAVSVFHVPFWMLPSPGDIARESQGNASGIWAHTAATLRLTLIGF 68 W +A+IF W+ + VP ++LP P I E + H+ T+ G Sbjct: 11 WLFFIALIF---VWEFS----KVPQYLLPKPSSIVLEGLSQWKILMDHSLYTILEAFSGL 63 Query: 69 PVGTGVGLIVALVLHLVPWLKRALYPLLILSQNVPSIALGPLLIIWFGFGLLPKIVLITL 128 +G +G+ +A+++ L +K +YP+LI+SQ +P +A+ PL+IIWFG G+ KI ++ Sbjct: 64 VIGLVLGVGLAVLMDLFQTVKEVMYPILIISQAIPIVAVAPLVIIWFGLGVGTKIGIVAF 123 Query: 129 VCFFPVAVAAMGGLAQSDRIMMNYMKMAGANQWQIFTKXXXXXXXXXXXXXXKISATYAV 188 V FPVA+ + G D+ ++ K+ A + QI+ KISATYAV Sbjct: 124 VTLFPVALNTLEGFRTIDQDALDLFKVMKATKIQIYRYLVLPHTLPYVLSGLKISATYAV 183 Query: 189 MGAVVAEWIGADKGIGYYMLLQKASYRTDR 218 + AV+ EW+GA+KG+G YM+ ++R DR Sbjct: 184 VSAVIGEWLGAEKGLGIYMIRAMNTFRADR 213 >BH2681 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 250 Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 2 RSYWNQIWPPLVAVIFFLGAWQLAVSVFHVPFWMLPSPGDIA-RESQGNASGIWAHTAAT 60 RSY Q P + + + W+++ + P ++LPSP I R + S + H AT Sbjct: 3 RSY--QALEPTLFFLMLMVIWEISARMIGQP-YLLPSPIQIVMRTIDLSESLFFTHLPAT 59 Query: 61 LRLTLIGFPVGTGVGLIVALVLHLVPWLKRALYPLLILSQNVPSIALGPLLIIWFGFGLL 120 L + IG + +G++++L++ ++RA+YPLL+ SQ +P IAL P+ ++WFG+ + Sbjct: 60 LAIISIGLALSIVLGILLSLLMFWNERVERAVYPLLVASQTIPVIALAPIFVLWFGYSIW 119 Query: 121 PKIVLITLVCFFPVAVAAMGGLAQSDRIMMNYMKMAGANQWQIFTKXXXXXXXXXXXXXX 180 K+ + L+ FFP+ V GL ++R GA + Q+F + Sbjct: 120 SKVAVTVLLTFFPITVNTYDGLKSTNRQYEELFYTMGATKRQLFYRLFVPSTLPSFLTGL 179 Query: 181 KISATYAVMGAVVAEWIGADKGIGYY 206 +I+ AV+GA V EW+GA++G+GY+ Sbjct: 180 RIAVPLAVIGAAVGEWLGANEGLGYF 205 >AGl1202 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 134 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 0/241 (0%), Positives = 0/241 (0%), Gaps = 2/241 (0%) Query: 15 VIFFLGAWQLAVSVFHVPFWMLPSPGDIARESQG--NASGIWAHTAATLRLTLIGFPVGT 72 V V + + A + A + +++ + Sbjct: 21 SCEKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDA 80 Query: 73 GVGLIVALVLHLVPWLKRALYPLLILSQNVPSIALGPLLIIWFGFGLLPKIVLITLVCFF 132 Sbjct: 81 140 Query: 133 PVAVAAMGGLAQSDRIMMNYMKMAGANQWQIFTKXXXXXXXXXXXXXXKISATYAVMGAV 192 Sbjct: 141 200 Query: 193 VAEWIGADKGIGYYMLLQKASYRTDRMFXXXXXXXXXXXXXXXXXXXXEKWLVRWKPRKA 252 Sbjct: 201 260 Query: 253 S 253 Sbjct: 261 261 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.141 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,635,183 Number of extensions: 605849 Number of successful extensions: 2006 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 1957 Number of HSP's successfully gapped: 69 Length of query: 253 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 149 Effective length of database: 26,383,695 Effective search space: 3931170555 Effective search space used: 3931170555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)